View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_low_2 (Length: 581)
Name: NF17468_low_2
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 224 - 581
Target Start/End: Complemental strand, 50572630 - 50572273
Alignment:
| Q |
224 |
tccatgactgcaaaaacttcttttgcaataatacatacacacacaaacaagaataggaactagtcataaaactcagatttacttctaaacaaaattaaac |
323 |
Q |
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| T |
50572630 |
tccatgactgcaaaaacttcttttgcaataatacacacacacacaaacaagaataggaactagtcataaaactcagatttacttctaaacaaaattaaac |
50572531 |
T |
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| Q |
324 |
aatctagccaagtgtacaacttacatcctctagttttgagttcaaatcatgaatctttttctctaacttggctacccgagattcccagttcactttctca |
423 |
Q |
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| T |
50572530 |
aatctagccaagtgtacaacttacatcctctagttttgagttcaaatcatgaatctttttctctaacttggctacccgagattcccagttcactttctca |
50572431 |
T |
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| Q |
424 |
ctgttttgtgcttcgagttcgcttttaagcttgtcaacctgcattaagaatttcagactatgcacaaagaataacaatcattgcataatatatcaattat |
523 |
Q |
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| T |
50572430 |
ctgttttgtgcttcgagttcgcttttaagcttgtcaacctgcattaagaatttcagactatgcacaaagaataacaatcattgcataatatatcaattat |
50572331 |
T |
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| Q |
524 |
ctccttcatacatgacctgcttctgtagttcaccggcacgtgcataagcctttccaac |
581 |
Q |
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| T |
50572330 |
ctccttcatacatgacctgcttctgtagttcaccggcacgtgcataagcctttccaac |
50572273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 50572837 - 50572703
Alignment:
| Q |
17 |
taggaagtggtagttgtgggagtgtagtaaaggcggactgaattatacagataaaagaagttagcagaggtaacttctgagcatgctgatcacaatcaga |
116 |
Q |
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| T |
50572837 |
taggaagtggtagttgtgggagtgtagtaaaggtggactgaattatacagataaaagaagttagcagaggtaacttctgagcatgctgatcacaatcaga |
50572738 |
T |
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| Q |
117 |
atgggttggtttacttaataagcatctcattttgc |
151 |
Q |
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| T |
50572737 |
atgtgtttgtttacttaataagcatctcattttgc |
50572703 |
T |
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