View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17468_low_20 (Length: 328)
Name: NF17468_low_20
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_20 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 40451394 - 40451701
Alignment:
| Q |
21 |
tcaatccaagacaagacatgtctgcacccgtatgcatatgttgcactcaaaaataagaaatcattactatatagtgttctgaaatatttgacagcagtaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40451394 |
tcaatccaagacaagacatgtctgcacccgtatgcatatgttgcactcaaaaataagaaatcattactatatagtgttctgaaatatttgacagcagtaa |
40451493 |
T |
|
| Q |
121 |
taattacaaacatttcacaaatagtcacccgtgaaaaataatagtactcttatgtcgtggaatatgtatacatttttctataaatatctatataaaattg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40451494 |
taattacaaacatttcacaaatagtcacccgtgaaaaataatagtactcttatgtcgtggaatatgtatacatttttctataaatatatatataaaattg |
40451593 |
T |
|
| Q |
221 |
ggatacagttatatgaaaatgagacaaaaatgttcacatatttcctgttgttagatagaaattgaggaagattaaacagtaaaccttttaaccatatgta |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40451594 |
ggatacagttatatgaaaatgagacaaaaatgttcacatatttcctgttgttagatagaaattgaggaagactaaacagtaaaccttttaaccatatgta |
40451693 |
T |
|
| Q |
321 |
aaataaag |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
40451694 |
aaataaag |
40451701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University