View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_low_23 (Length: 309)
Name: NF17468_low_23
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 42959281 - 42959565
Alignment:
| Q |
11 |
acaagataaaggtttgcaaagttaagatgacaacattgaaaccaatccatccatgttgagaaataatttcaaatgacatatggggtaccaaacatataaa |
110 |
Q |
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| T |
42959281 |
acaagataaaggtttgcaaagttaagatgacaacattgaaaccaatccat----gttgagaaataatttcaaatgacatatggggtaccaaacatataaa |
42959376 |
T |
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| Q |
111 |
ttgtaaccattggtcacccttgcaaacagttatggatgacctac------aaggttacagccccccagcaccccatttaaatccacatggtagggtttgg |
204 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42959377 |
ttgtaaccattggtcacctttgcaaacagttatggatgacctacaactacaaggttacagccccccagcaccccatttaaatccacatggtagggtttgg |
42959476 |
T |
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| Q |
205 |
aatatgtttcaatacatgtagtttgagctatgcagaaaactacttctttgaaatacttaatttgtgttctacatatgaccattgcatgt |
293 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42959477 |
aatatgtttcaatacatgtactttgagctatgcagaaaactacttctttgaaatacttaatttgtgttctacatatgaccattgcatgt |
42959565 |
T |
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