View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_low_29 (Length: 243)
Name: NF17468_low_29
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 41304380 - 41304594
Alignment:
| Q |
11 |
caaaggtaaaacacacattaatgatctttaccaacaatcaatcagaagatttgcagttttgcacaaagtcagatccttaagttggttagacgaatgttgg |
110 |
Q |
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| T |
41304380 |
caaaggtaaaacacacattaatgatctttaccaacaatcaatcagaagatttgcagttttgcacaaagtcagatccttaagttggttagacgaatgttgg |
41304479 |
T |
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| Q |
111 |
tcctgcaggggctagtcagatccttagattgctctgacgtaatacaagtaagttctttcaaaatgtgatgaagataagttaagcatgcttgaacgtcttc |
210 |
Q |
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| T |
41304480 |
tcctgcaggggctagtcagatccttaggtttctcttacgtaatacaagtaagttctttcaaaatgtgatgaagataagttaagcatgcttgaacgtcttc |
41304579 |
T |
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| Q |
211 |
atgctaagccaatgg |
225 |
Q |
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| T |
41304580 |
atgctaagccaatgg |
41304594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 1075950 - 1075898
Alignment:
| Q |
68 |
tttgcacaaagtcagatccttaagttggttagacgaatgttggtcctgcaggg |
120 |
Q |
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| T |
1075950 |
tttgaacaaagtcggatccttaagttggttagacgaatgctggtcctgcaggg |
1075898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 1096218 - 1096270
Alignment:
| Q |
68 |
tttgcacaaagtcagatccttaagttggttagacgaatgttggtcctgcaggg |
120 |
Q |
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| T |
1096218 |
tttgaacaaaatcggatccttaagttggttagacgaatgctggtcctgcaggg |
1096270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 1096319 - 1096359
Alignment:
| Q |
156 |
aagtaagttctttcaaaatgtgatgaagataagttaagcat |
196 |
Q |
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| T |
1096319 |
aagtaagttctttccaaatgtgatgaagataagttaagcat |
1096359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 1075840 - 1075777
Alignment:
| Q |
163 |
ttctttcaaaatgtgat-gaagataagttaagcatgcttgaacgtcttcatgctaagccaatgg |
225 |
Q |
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| T |
1075840 |
ttctttcaaaatgtgtttgaagatacattaagcatgcttgaacatcttcatgctgagccaatgg |
1075777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 5128599 - 5128651
Alignment:
| Q |
68 |
tttgcacaaagtcagatccttaagttggttagacgaatgttggtcctgcaggg |
120 |
Q |
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| T |
5128599 |
tttgaacaaagtcggatccttaagttggttagacgaatgctggtcctgcaggg |
5128651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 5128708 - 5128771
Alignment:
| Q |
163 |
ttctttcaaaatgtgat-gaagataagttaagcatgcttgaacgtcttcatgctaagccaatgg |
225 |
Q |
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| T |
5128708 |
ttctttcaaaatgtgtttgaagatacattaagcatgcttgaacatcttcatgctgagccaatgg |
5128771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 13015147 - 13015211
Alignment:
| Q |
163 |
ttctttcaaaatgtgatgaagataagttaagcat----gcttgaacgtcttcatgctaagccaat |
223 |
Q |
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| T |
13015147 |
ttctttcaaaatgtgatgaagataagttaagcatgcatgcttgaacatcttcatgatgagccaat |
13015211 |
T |
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