View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_low_3 (Length: 515)
Name: NF17468_low_3
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 20 - 502
Target Start/End: Complemental strand, 51740840 - 51740358
Alignment:
| Q |
20 |
gtgtctgcagtgaatgcatctaatgaattattaatttcaacgacgtcattgccaccataatcatcatcgtcactaaggtcagcattttccttttcatgaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740840 |
gtgtctgcagtgaatgcatctaatgaattattaatttcaacgacgtcattgccaccataatcatcatcgtcactaaggtcagcattttccttttcatgaa |
51740741 |
T |
|
| Q |
120 |
acaataaattggatttgatcttcttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgttttagatccatgcattgctagtattgttgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740740 |
acaataaattggatttgatcttcttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgttttagatccatgcattgctagtattgttgc |
51740641 |
T |
|
| Q |
220 |
aagtattgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740640 |
aagtattgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaac |
51740541 |
T |
|
| Q |
320 |
attttctcttcccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctactagcacaatgttgcaatcttctgcattta |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51740540 |
attttctcttcccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctactagcacaacgttgcaatcttctgcattta |
51740441 |
T |
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| Q |
420 |
aatcctgtatatacaataataaccaaattaagagttatcatttaataatacaaatgaaactgcatgaattacctacctttgct |
502 |
Q |
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| T |
51740440 |
aatcctgtatatacaataataaccaaattaagagtaatcatttaataatacaaatgaaactgcatgaattacctacctttgct |
51740358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 134 - 395
Target Start/End: Complemental strand, 10201521 - 10201260
Alignment:
| Q |
134 |
ttgatcttcttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgttttagatccatgcattgctagtattgttgcaagtattgatgata |
233 |
Q |
| |
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||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||| | |||| |
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| T |
10201521 |
ttgattttcttcacaagctctattaagtgcattaaataagtggtggaaggtgatgttttagagccatgtattgctagtattgtggctagtatcgcagata |
10201422 |
T |
|
| Q |
234 |
cttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccc |
333 |
Q |
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|||| ||||||||||| ||||||||||||||| ||| || |||||||| |||||||||||||| | ||||||||| ||||| ||||||||||||||||| |
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| T |
10201421 |
cttgtcgaggatcatacacacaagccaaaattttaagttcatcttccatttcttgtggttcaattgttgtatggttgtttgaaaacattttctcttcccc |
10201322 |
T |
|
| Q |
334 |
tcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctactagca |
395 |
Q |
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|||||| ||| |||||||| |||||||||||||||||||| | |||||| | |||||||| |
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| T |
10201321 |
ctttgctataaacgacacaattattcctgatattattgtgtttaatactatcgatactagca |
10201260 |
T |
|
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