View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17468_low_38 (Length: 209)

Name: NF17468_low_38
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17468_low_38
NF17468_low_38
[»] chr7 (3 HSPs)
chr7 (1-205)||(46262390-46262593)
chr7 (135-205)||(24931572-24931642)
chr7 (48-116)||(24931648-24931716)
[»] chr3 (5 HSPs)
chr3 (1-205)||(55129440-55129645)
chr3 (14-183)||(3968835-3969005)
chr3 (136-181)||(2786884-2786928)
chr3 (14-94)||(3999890-3999970)
chr3 (80-116)||(18973093-18973129)
[»] chr2 (2 HSPs)
chr2 (39-205)||(9561101-9561268)
chr2 (58-126)||(42048664-42048732)
[»] chr4 (1 HSPs)
chr4 (9-205)||(37707622-37707819)
[»] chr1 (2 HSPs)
chr1 (80-205)||(38564507-38564633)
chr1 (13-183)||(13987247-13987418)
[»] chr8 (4 HSPs)
chr8 (83-183)||(31180414-31180515)
chr8 (82-205)||(544693-544816)
chr8 (69-200)||(40530843-40530975)
chr8 (136-205)||(23426936-23427004)
[»] chr5 (1 HSPs)
chr5 (80-205)||(18557142-18557267)
[»] chr6 (1 HSPs)
chr6 (47-87)||(7546740-7546780)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 46262390 - 46262593
Alignment:
Q  1 aacaccggttcaacgccaccctctagaccattgttccttcttatgttgcggaggagaaaacctccacccatccaggaattggatccaccacaattgcacg 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  46262390 aacaccggttcaacgccacc-tctagaccattgttccttcttatgtcgcggaggagaaaacctccaccca-ccaggaactggatccaccacaattgcacg 46262487  T
Q  101 accctttgcagacctatagaacgtcgccaactaa-caccgacgacgaaggggaggttgggaaagcgcacagaggcttggacgactaagaagaaggaacag 199  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  46262488 accctttgcagacctatagaacgtcgccaactaaacaccgacgacgaaggggaggttaggaaagcgcacagaggcttggacgactaagaagaaggaacat 46262587  T
Q  200 taacca 205  Q
    ||||||    
T  46262588 taacca 46262593  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 24931642 - 24931572
Alignment:
Q  135 caccgacgacgaaggggaggttgggaaagcgcacagaggcttggacgactaagaagaaggaacagtaacca 205  Q
    |||||||||||  |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||    
T  24931642 caccgacgacgtgggggaggttgggaaagcgcacagaagcttggacgactaggaagaaagaacagtaacca 24931572  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 24931716 - 24931648
Alignment:
Q  48 gcggaggagaaaacctccacccatccaggaattggatccaccacaattgcacgaccctttgcagaccta 116  Q
    ||||||||||||||||||||||||||||| |   || || |||||| |  |||||||||||||||||||    
T  24931716 gcggaggagaaaacctccacccatccagggacatgaacccccacaactatacgaccctttgcagaccta 24931648  T

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Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 55129645 - 55129440
Alignment:
Q  1 aacaccggttcaacgccaccctctagaccattgttccttcttatgttgcggaggagaaaacctccacccatccaggaattggatccaccacaattgcacg 100  Q
    |||||||||||| |||||||||| | |||| | | ||  | || || || |||||||||||||||||| |||||||||   |||||||||||| ||||||    
T  55129645 aacaccggttcagcgccaccctcaaaaccactataccgacatacgtcgcagaggagaaaacctccaccaatccaggaacgtgatccaccacaactgcacg 55129546  T
Q  101 accctttgcagacctatagaacgtcgccaactaa-caccgacgacgaaggggaggttgggaaagcgcacagaggcttggacgactaagaagaaggaacag 199  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  55129545 accctttgcagacctagagaacgtcgccaactaaacaccgacgacaaaggggaggttgggaaagcgcatagaagcttggacgactaagaagaaggaacag 55129446  T
Q  200 taacca 205  Q
    ||||||    
T  55129445 taacca 55129440  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 3968835 - 3969005
Alignment:
Q  14 cgccaccctctagaccattgttccttcttatgttgcggaggagaaaacctccacccatccaggaattggatccaccacaattgcacgaccctttgcagac 113  Q
    ||||||||||| ||| ||||| || ||||| || ||||||||||||||  ||||||||||||| |  ||| ||||||||| ||||||||| |||||||||    
T  3968835 cgccaccctctggactattgtaccatcttacgtcgcggaggagaaaacacccacccatccagggacaggaaccaccacaactgcacgaccttttgcagac 3968934  T
Q  114 ctatagaacgtcgccaact-aacaccgacgacgaaggggaggttgggaaagcgcacagaggcttggacgac 183  Q
    ||| ||||| ||| | ||| || ||||||||||| || ||||||||||||||||||||| |||||||||||    
T  3968935 ctagagaacatcgtcgactaaaaaccgacgacgagggagaggttgggaaagcgcacagaagcttggacgac 3969005  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 2786884 - 2786928
Alignment:
Q  136 accgacgacgaaggggaggttgggaaagcgcacagaggcttggacg 181  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||    
T  2786884 accgacgacga-ggggaggttgggaaagcgcacagaagcttggacg 2786928  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 3999970 - 3999890
Alignment:
Q  14 cgccaccctctagaccattgttccttcttatgttgcggaggagaaaacctccacccatccaggaattggatccaccacaat 94  Q
    ||||||||||| ||| ||||| || ||||| || ||||||||||||||  ||||||||||||| |  ||| ||||||||||    
T  3999970 cgccaccctctggactattgtaccatcttacgtcgcggaggagaaaacacccacccatccagggacaggaaccaccacaat 3999890  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 18973129 - 18973093
Alignment:
Q  80 tggatccaccacaattgcacgaccctttgcagaccta 116  Q
    |||||||||||||| |||||||||||||||| |||||    
T  18973129 tggatccaccacaactgcacgaccctttgcaaaccta 18973093  T

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Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 9561101 - 9561268
Alignment:
Q  39 tcttatgttgcggaggagaaaacctccacccatccaggaattggatccaccacaattgcacgaccctttgcagacctatagaacgtcgccaact-aacac 137  Q
    ||||| || ||||||||||||||||||||||||||||| |  ||||||||||||| ||||||||||||||||||||||  ||||   | | ||| |||||    
T  9561101 tcttacgtcgcggaggagaaaacctccacccatccaggtacaggatccaccacaactgcacgaccctttgcagacctagggaacactggcgactaaacac 9561200  T
Q  138 cgacgacgaaggggaggttgggaaagcgcacagaggcttggacgactaagaagaaggaacagtaacca 205  Q
     |||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||    
T  9561201 tgacgacgagggggaggttgggaaagcgcacagaagcttggacgacaaggaagaaggaacaataacca 9561268  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 42048664 - 42048732
Alignment:
Q  58 aaacctccacccatccaggaattggatccaccacaattgcacgaccctttgcagacctatagaacgtcg 126  Q
    ||||| ||| ||||||||  | |||||||||||||| |||| ||||||||||||||||| |||||||||    
T  42048664 aaaccaccaaccatccagagactggatccaccacaactgcaagaccctttgcagacctaaagaacgtcg 42048732  T

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Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 37707622 - 37707819
Alignment:
Q  9 ttcaacgccaccctctagaccattgttccttcttatgttgcggaggagaaaacctccacccatccaggaattggatccaccacaattgcacgaccctttg 108  Q
    ||||||||||||||||  |||| ||| || ||||| || | | | ||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||    
T  37707622 ttcaacgccaccctctgtaccactgtaccgtcttacgtcgtgaaagagaaaacctccatccatccgggaataggatccaccacaactgcacgaccctttg 37707721  T
Q  109 cagacctatag-aacgtcgccaact-aacaccgacgacgaaggggaggttgggaaagcgcacagaggcttggacgactaagaagaaggaacagtaacca 205  Q
    || ||||| || ||| ||||||||| ||||| ||||||||  ||||||||||||||||||||||  ||||||| ||||| |||||||||||| ||||||    
T  37707722 catacctagagaaacatcgccaactaaacactgacgacgagtgggaggttgggaaagcgcacagtagcttgga-gactaggaagaaggaacaataacca 37707819  T

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Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 38564633 - 38564507
Alignment:
Q  80 tggatccaccacaattgcacgaccctttgcagacctatagaacgtcgccaactaac-accgacgacgaaggggaggttgggaaagcgcacagaggcttgg 178  Q
    |||||||||||||| ||||||||||||||||||||||  ||||| | || || ||  |||||||||||||||||||||||||||||||||||| |||||     
T  38564633 tggatccaccacaactgcacgaccctttgcagacctaaggaacgccaccgaccaaagaccgacgacgaaggggaggttgggaaagcgcacagaagcttgt 38564534  T
Q  179 acgactaagaagaaggaacagtaacca 205  Q
    ||||| |  ||||||||||||||||||    
T  38564533 acgaccataaagaaggaacagtaacca 38564507  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 13987418 - 13987247
Alignment:
Q  13 acgccaccctctagaccattgttccttcttatgttgcggaggagaaaacctccacccatccaggaattggatccaccacaattgcacgaccctttgcaga 112  Q
    |||||||||||| ||| ||||| || ||||| |||| |||||||||||| | |||||||||| | || ||| ||||||||| ||||||||| |||| |||    
T  13987418 acgccaccctctggactattgtaccatcttacgttgtggaggagaaaacattcacccatccaaggataggaaccaccacaactgcacgaccttttgtaga 13987319  T
Q  113 cctatagaacgtcgccaact-aacaccgacgacgaaggggaggttgggaaagcgcacagaggcttggacgac 183  Q
    |||| |||||  || | ||| || ||||||||||| || ||||||||||||| ||||||| |||||||||||    
T  13987318 cctagagaacaccgtcgactaaaaaccgacgacgagggagaggttgggaaagtgcacagaagcttggacgac 13987247  T

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Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 31180414 - 31180515
Alignment:
Q  83 atccaccacaattgcacgaccctttgcagacctatagaacgtcgccaactaaca-ccgacgacgaaggggaggttgggaaagcgcacagaggcttggacg 181  Q
    ||||||||||| |||||||||||||||||||||  |||||| |||| || || | |||||||||  ||||||||| |||||||||||||| |||||||||    
T  31180414 atccaccacaactgcacgaccctttgcagaccttaagaacgccgccgaccaaaaaccgacgacgtgggggaggtttggaaagcgcacagaagcttggacg 31180513  T
Q  182 ac 183  Q
    ||    
T  31180514 ac 31180515  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 544693 - 544816
Alignment:
Q  82 gatccaccacaattgcacgaccctttgcagacctatagaacgtcgccaactaac-accgacgacgaaggggaggttgggaaagcgcacagaggcttggac 180  Q
    |||||||||||| |||||||||||||  ||||||| || ||| ||||||| ||  ||||||||||| || |||||||||||||| || ||| ||||||||    
T  544693 gatccaccacaactgcacgaccctttatagacctaaaggacgacgccaaccaaagaccgacgacga-ggagaggttgggaaagcacaaagaagcttggac 544791  T
Q  181 gactaagaagaaggaacagtaacca 205  Q
    ||| |  ||||||||||| ||||||    
T  544792 gaccagaaagaaggaacaataacca 544816  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 40530975 - 40530843
Alignment:
Q  69 catccaggaattggatccaccacaattgcacgaccctttgcagacctatagaacgtcgccaactaa-caccgacgacgaaggggaggttgggaaagcgca 167  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||| || ||| |||| || ||  |||| |||||| || |||||||||| | ||||    
T  40530975 catccagggactggatccaccacaactgcacgaccctttgcagacctaaaggacgccgccgaccaatgaccggcgacgagggagaggttgggacaacgca 40530876  T
Q  168 cagaggcttggacgactaagaagaaggaacagt 200  Q
    |||| ||||||| ||  |  |||||||||||||    
T  40530875 cagaagcttggatgatcagaaagaaggaacagt 40530843  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 23427004 - 23426936
Alignment:
Q  136 accgacgacgaaggggaggttgggaaagcgcacagaggcttggacgactaagaagaaggaacagtaacca 205  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||| |  ||||||||||| ||||||    
T  23427004 accgacgacga-ggagaggttgggaaagcgcacagaagcttggacgaccagaaagaaggaacaataacca 23426936  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 18557267 - 18557142
Alignment:
Q  80 tggatccaccacaattgcacgaccctttgcagacctatagaacgtcgcc-aactaacaccgacgacgaaggggaggttgggaaagcgcacagaggcttgg 178  Q
    |||||||||||||| ||||||||||||| |||||||| || ||| |||| | | || |||||||||| |||||||||||||||||| |||| | ||||||    
T  18557267 tggatccaccacaactgcacgaccctttacagacctaaaggacgacgccgaccaaagaccgacgacg-aggggaggttgggaaagcacacaaaagcttgg 18557169  T
Q  179 acgactaagaagaaggaacagtaacca 205  Q
    ||||| |  |||| ||||| |||||||    
T  18557168 acgaccagaaagacggaactgtaacca 18557142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 7546740 - 7546780
Alignment:
Q  47 tgcggaggagaaaacctccacccatccaggaattggatcca 87  Q
    |||||| ||||||||||||||||| ||| ||||||||||||    
T  7546740 tgcggaagagaaaacctccacccaaccatgaattggatcca 7546780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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