View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17468_low_4 (Length: 485)

Name: NF17468_low_4
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17468_low_4
NF17468_low_4
[»] scaffold1766 (1 HSPs)
scaffold1766 (234-475)||(478-726)
[»] scaffold0020 (1 HSPs)
scaffold0020 (234-475)||(168780-169029)
[»] scaffold0032 (1 HSPs)
scaffold0032 (246-475)||(68331-68566)
[»] chr8 (27 HSPs)
chr8 (104-265)||(22610266-22610422)
chr8 (104-201)||(23884065-23884166)
chr8 (104-193)||(36732549-36732640)
chr8 (139-264)||(18834356-18834474)
chr8 (139-265)||(21399647-21399770)
chr8 (139-265)||(21794140-21794263)
chr8 (104-173)||(36305900-36305970)
chr8 (246-321)||(13660797-13660872)
chr8 (246-321)||(13719440-13719515)
chr8 (216-321)||(17906792-17906897)
chr8 (217-265)||(22345169-22345217)
chr8 (217-265)||(22356829-22356877)
chr8 (216-265)||(22208273-22208322)
chr8 (216-321)||(23889803-23889908)
chr8 (216-259)||(22483790-22483833)
chr8 (216-266)||(36732410-36732460)
chr8 (236-321)||(17218726-17218806)
chr8 (216-264)||(18816295-18816343)
chr8 (246-321)||(19700195-19700270)
chr8 (234-317)||(22254788-22254871)
chr8 (246-315)||(16412585-16412653)
chr8 (104-140)||(22966707-22966744)
chr8 (216-321)||(23948267-23948372)
chr8 (154-186)||(4380691-4380723)
chr8 (154-186)||(18816369-18816401)
chr8 (154-186)||(21514637-21514669)
chr8 (216-264)||(21514695-21514743)
[»] chr3 (34 HSPs)
chr3 (104-265)||(3527156-3527311)
chr3 (121-193)||(22841351-22841423)
chr3 (131-203)||(13522333-13522408)
chr3 (139-265)||(6156641-6156763)
chr3 (139-264)||(54875474-54875596)
chr3 (216-265)||(12917305-12917354)
chr3 (139-275)||(17684824-17684957)
chr3 (139-265)||(6159335-6159458)
chr3 (153-265)||(14442119-14442228)
chr3 (153-251)||(17669711-17669806)
chr3 (216-265)||(2841505-2841554)
chr3 (216-277)||(14152386-14152447)
chr3 (216-259)||(22841284-22841327)
chr3 (121-179)||(12151028-12151085)
chr3 (121-179)||(12155105-12155165)
chr3 (216-265)||(14520450-14520499)
chr3 (216-265)||(14641547-14641596)
chr3 (216-265)||(17208528-17208577)
chr3 (216-257)||(45803338-45803379)
chr3 (246-315)||(46823085-46823153)
chr3 (139-201)||(2841563-2841628)
chr3 (120-179)||(3160707-3160765)
chr3 (154-201)||(24549011-24549057)
chr3 (246-321)||(46752140-46752214)
chr3 (155-201)||(50755311-50755360)
chr3 (216-250)||(24547204-24547238)
chr3 (246-315)||(10379963-10380031)
chr3 (216-277)||(16050931-16050992)
chr3 (216-265)||(29907643-29907692)
chr3 (216-265)||(29948809-29948858)
chr3 (216-265)||(29997963-29998012)
chr3 (154-186)||(17208470-17208502)
chr3 (253-321)||(18366458-18366526)
chr3 (108-179)||(48631232-48631303)
[»] chr1 (18 HSPs)
chr1 (216-321)||(8275932-8276037)
chr1 (104-265)||(34392662-34392821)
chr1 (104-265)||(45499436-45499595)
chr1 (119-265)||(8306516-8306659)
chr1 (139-264)||(20588566-20588690)
chr1 (139-264)||(20593104-20593228)
chr1 (216-265)||(35895103-35895152)
chr1 (216-311)||(38056627-38056720)
chr1 (216-265)||(17901793-17901842)
chr1 (216-265)||(50544876-50544925)
chr1 (216-251)||(24719523-24719558)
chr1 (216-265)||(635003-635052)
chr1 (216-265)||(28476733-28476782)
chr1 (216-321)||(45755524-45755629)
chr1 (246-319)||(51477027-51477100)
chr1 (119-179)||(21188114-21188173)
chr1 (224-264)||(22145666-22145706)
chr1 (154-186)||(28476808-28476840)
[»] chr4 (22 HSPs)
chr4 (104-265)||(9622383-9622542)
chr4 (216-318)||(13847205-13847307)
chr4 (119-193)||(16296783-16296857)
chr4 (139-265)||(55583126-55583249)
chr4 (216-265)||(10273387-10273436)
chr4 (216-259)||(26446211-26446254)
chr4 (246-321)||(27996825-27996899)
chr4 (216-264)||(12424290-12424338)
chr4 (244-315)||(15191215-15191285)
chr4 (234-321)||(21062663-21062750)
chr4 (216-265)||(14631139-14631188)
chr4 (216-265)||(16296942-16296991)
chr4 (119-179)||(14477544-14477603)
chr4 (222-258)||(35660966-35661002)
chr4 (246-321)||(51993595-51993670)
chr4 (216-250)||(33186907-33186941)
chr4 (224-265)||(9639022-9639063)
chr4 (253-314)||(19739779-19739839)
chr4 (216-265)||(25513855-25513904)
chr4 (154-186)||(14631081-14631113)
chr4 (154-186)||(25513797-25513829)
chr4 (154-186)||(26446153-26446185)
[»] chr7 (36 HSPs)
chr7 (104-265)||(18570542-18570700)
chr7 (107-193)||(8930833-8930920)
chr7 (104-265)||(13744509-13744665)
chr7 (104-265)||(33556104-33556262)
chr7 (104-250)||(36300655-36300796)
chr7 (139-265)||(58412-58532)
chr7 (104-201)||(15700792-15700890)
chr7 (104-264)||(25943163-25943319)
chr7 (216-277)||(8488081-8488142)
chr7 (216-277)||(8513740-8513801)
chr7 (104-145)||(16250342-16250383)
chr7 (216-265)||(20252181-20252230)
chr7 (216-265)||(38299752-38299801)
chr7 (234-321)||(4071842-4071929)
chr7 (121-265)||(13315081-13315219)
chr7 (234-321)||(35771384-35771471)
chr7 (139-193)||(15720709-15720763)
chr7 (216-265)||(708428-708477)
chr7 (216-265)||(8930764-8930813)
chr7 (216-265)||(15575648-15575697)
chr7 (216-265)||(18874664-18874713)
chr7 (216-265)||(19195615-19195664)
chr7 (216-321)||(33002157-33002262)
chr7 (216-265)||(47095456-47095505)
chr7 (216-264)||(15720783-15720831)
chr7 (216-264)||(43276744-43276792)
chr7 (222-266)||(43745666-43745710)
chr7 (246-321)||(11054747-11054822)
chr7 (234-321)||(15289127-15289214)
chr7 (246-321)||(36704514-36704589)
chr7 (216-250)||(15700897-15700931)
chr7 (216-266)||(48212725-48212775)
chr7 (216-265)||(3287748-3287797)
chr7 (216-249)||(15700750-15700783)
chr7 (154-186)||(15575723-15575755)
chr7 (154-186)||(48212803-48212835)
[»] chr2 (15 HSPs)
chr2 (121-193)||(25584179-25584251)
chr2 (131-265)||(28344987-28345115)
chr2 (216-265)||(23801500-23801549)
chr2 (119-201)||(149561-149646)
chr2 (216-265)||(21315475-21315524)
chr2 (216-265)||(21335265-21335314)
chr2 (222-266)||(23610636-23610680)
chr2 (246-321)||(24792702-24792777)
chr2 (246-315)||(24833972-24834041)
chr2 (104-193)||(34491312-34491401)
chr2 (216-265)||(149500-149549)
chr2 (248-321)||(5986213-5986286)
chr2 (216-265)||(21369297-21369346)
chr2 (246-315)||(32214200-32214268)
chr2 (154-186)||(28652626-28652658)
[»] scaffold0031 (1 HSPs)
scaffold0031 (104-265)||(127342-127501)
[»] scaffold0461 (1 HSPs)
scaffold0461 (104-186)||(12381-12464)
[»] chr6 (15 HSPs)
chr6 (104-265)||(10446108-10446270)
chr6 (234-321)||(15998911-15998998)
chr6 (104-179)||(1818848-1818924)
chr6 (253-321)||(16966807-16966875)
chr6 (246-319)||(18259118-18259192)
chr6 (217-266)||(21683073-21683122)
chr6 (246-315)||(23993053-23993121)
chr6 (222-265)||(29045281-29045324)
chr6 (216-265)||(19825485-19825534)
chr6 (216-265)||(23658093-23658142)
chr6 (238-311)||(31731857-31731930)
chr6 (246-315)||(34964004-34964072)
chr6 (154-186)||(15998835-15998867)
chr6 (216-264)||(20410512-20410560)
chr6 (119-179)||(24506196-24506255)
[»] scaffold0174 (3 HSPs)
scaffold0174 (121-265)||(19769-19909)
scaffold0174 (216-265)||(5458-5507)
scaffold0174 (216-264)||(11620-11668)
[»] chr5 (14 HSPs)
chr5 (104-265)||(21398643-21398803)
chr5 (104-193)||(22111873-22111962)
chr5 (246-321)||(21914435-21914510)
chr5 (139-265)||(32607315-32607438)
chr5 (104-179)||(1626999-1627074)
chr5 (216-264)||(23199207-23199255)
chr5 (246-321)||(25249771-25249846)
chr5 (246-321)||(25313555-25313630)
chr5 (216-265)||(16063755-16063804)
chr5 (216-265)||(18744878-18744927)
chr5 (123-179)||(21504055-21504111)
chr5 (273-321)||(19616395-19616443)
chr5 (216-259)||(1627072-1627115)
chr5 (154-186)||(1627142-1627174)
[»] scaffold0338 (1 HSPs)
scaffold0338 (246-321)||(10705-10780)
[»] scaffold0379 (3 HSPs)
scaffold0379 (104-264)||(10843-10999)
scaffold0379 (254-321)||(3837-3903)
scaffold0379 (248-321)||(13831-13903)
[»] scaffold0439 (1 HSPs)
scaffold0439 (134-203)||(12236-12308)
[»] scaffold0004 (6 HSPs)
scaffold0004 (104-265)||(75831-75990)
scaffold0004 (216-321)||(111364-111470)
scaffold0004 (105-193)||(72982-73071)
scaffold0004 (104-172)||(110219-110288)
scaffold0004 (216-264)||(73091-73139)
scaffold0004 (216-265)||(66071-66120)
[»] scaffold0555 (2 HSPs)
scaffold0555 (134-193)||(8814-8873)
scaffold0555 (216-265)||(8745-8794)
[»] scaffold0220 (2 HSPs)
scaffold0220 (234-321)||(19976-20063)
scaffold0220 (223-311)||(13960-14046)
[»] scaffold0676 (2 HSPs)
scaffold0676 (119-201)||(2726-2811)
scaffold0676 (216-265)||(2885-2934)
[»] scaffold0139 (1 HSPs)
scaffold0139 (222-265)||(23544-23587)
[»] scaffold0076 (1 HSPs)
scaffold0076 (244-299)||(22464-22519)
[»] scaffold0098 (2 HSPs)
scaffold0098 (139-193)||(40037-40091)
scaffold0098 (216-250)||(40111-40145)
[»] scaffold0878 (2 HSPs)
scaffold0878 (216-265)||(3421-3470)
scaffold0878 (154-186)||(3496-3528)
[»] scaffold1939 (1 HSPs)
scaffold1939 (119-179)||(39-99)
[»] scaffold0853 (1 HSPs)
scaffold0853 (216-264)||(2454-2502)
[»] scaffold0431 (1 HSPs)
scaffold0431 (216-264)||(5637-5685)
[»] scaffold0414 (2 HSPs)
scaffold0414 (216-264)||(11160-11208)
scaffold0414 (154-193)||(11228-11267)
[»] scaffold0151 (1 HSPs)
scaffold0151 (246-321)||(31142-31217)
[»] scaffold0083 (1 HSPs)
scaffold0083 (218-321)||(4988-5091)
[»] scaffold0021 (2 HSPs)
scaffold0021 (119-178)||(17019-17077)
scaffold0021 (119-178)||(26550-26608)
[»] scaffold0730 (1 HSPs)
scaffold0730 (120-251)||(6518-6643)
[»] scaffold0056 (1 HSPs)
scaffold0056 (216-266)||(18279-18329)
[»] scaffold1186 (2 HSPs)
scaffold1186 (216-265)||(2024-2073)
scaffold1186 (154-186)||(1966-1998)
[»] scaffold0594 (1 HSPs)
scaffold0594 (216-265)||(2251-2300)
[»] scaffold0148 (1 HSPs)
scaffold0148 (216-265)||(8848-8897)
[»] scaffold0061 (2 HSPs)
scaffold0061 (216-265)||(14585-14634)
scaffold0061 (216-265)||(23643-23692)
[»] scaffold0048 (1 HSPs)
scaffold0048 (216-265)||(68725-68774)
[»] scaffold0005 (2 HSPs)
scaffold0005 (216-265)||(186195-186244)
scaffold0005 (154-186)||(186270-186302)
[»] scaffold0065 (1 HSPs)
scaffold0065 (253-317)||(55982-56045)
[»] scaffold0001 (1 HSPs)
scaffold0001 (246-314)||(499092-499159)
[»] scaffold0247 (2 HSPs)
scaffold0247 (104-186)||(972-1054)
scaffold0247 (216-264)||(1080-1128)
[»] scaffold0042 (1 HSPs)
scaffold0042 (246-321)||(29422-29497)
[»] scaffold0328 (1 HSPs)
scaffold0328 (223-265)||(18639-18681)
[»] scaffold0231 (2 HSPs)
scaffold0231 (253-315)||(23649-23710)
scaffold0231 (216-265)||(17520-17569)
[»] scaffold0589 (1 HSPs)
scaffold0589 (286-319)||(4459-4492)
[»] scaffold0108 (1 HSPs)
scaffold0108 (224-265)||(6430-6471)
[»] scaffold0086 (1 HSPs)
scaffold0086 (216-265)||(35185-35234)
[»] scaffold0505 (1 HSPs)
scaffold0505 (216-264)||(4941-4988)
[»] scaffold0369 (1 HSPs)
scaffold0369 (154-186)||(15689-15721)
[»] scaffold0203 (1 HSPs)
scaffold0203 (154-186)||(18014-18046)


Alignment Details
Target: scaffold1766 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold1766
Description:

Target: scaffold1766; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 234 - 475
Target Start/End: Complemental strand, 726 - 478
Alignment:
Q  234 attagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccctacacctgtattg 333  Q
    ||||||||||| |||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||    
T  726 attagagaaagttagtcccacccctaccttaggataattgatcggcagcccttcctctttggttcttctcctctcttgttttctccctgtacctgtgttg 627  T
Q  334 acggcggctacgattccggatagtctaaccacgagcgtctatgtctctccggcctttccttg-------tttgaagtgggacgtgacgtcacaccaaaga 426  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  626 acggcggctacaattccggatagtctaaccacgagcgtctatgtctctccggcctttccttgcttgaaatttgaagtgggacgtgacgtcacaccaaaga 527  T
Q  427 ccttcctctattaatctacccgaggctcaccctaaaaaaccaaattcat 475  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  526 ccttcctctattaatctacccaaggctcacccttaaaaaccaaattcat 478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 234 - 475
Target Start/End: Complemental strand, 169029 - 168780
Alignment:
Q  234 attagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccctacacctgtattg 333  Q
    ||||||||||| |||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||    
T  169029 attagagaaagttagtcccacccctaccttaggataattgatcggcagcccttcctctttggttcttctcctctcttgttttctccctgtacctgtgttg 168930  T
Q  334 acggcggctacgattccggatagtctaaccacgagcgtctatgtctctccggcctttccttg-------tttgaagtgggacgtgacgtcacaccaaag- 425  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||     
T  168929 acggcggctacaattccggatagtctaaccacgagcgtctatgtctctccggcctttccttgcttgaaatttgaagtgggacgtgacgtcacaccaaaga 168830  T
Q  426 accttcctctattaatctacccgaggctcaccctaaaaaaccaaattcat 475  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  168829 accttcctctattaatctacccaaggctcacccttaaaaaccaaattcat 168780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 246 - 475
Target Start/End: Original strand, 68331 - 68566
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccctacacctgtattgacggcggctacg 345  Q
    |||||| ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||     
T  68331 tagtcccacccttaccttaagataatcgatcgacagcccttcctctttggttcttctcctctcttgttttctccctacacctttattgtcggcggctaca 68430  T
Q  346 attccggatagtctaaccacgagcgtctatgtctctccggcct---ttccttg---tttgaagtgggacgtgacgtcacaccaaagaccttcctctatta 439  Q
    |||| |||||||||||||||||||||||||||||||||| |||   || ||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  68431 attctggatagtctaaccacgagcgtctatgtctctccgaccttccttgcttgcaatttgaagtgggacgtgacgtcacaccaaagaccttcctctatta 68530  T
Q  440 atctacccgaggctcaccctaaaaaaccaaattcat 475  Q
    |||||||||||||||||||| |||||||||||||||    
T  68531 atctacccgaggctcacccttaaaaaccaaattcat 68566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 104 - 265
Target Start/End: Complemental strand, 22610422 - 22610266
Alignment:
Q  104 ttacgttaattcaatg-attacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaacatgttaaact 202  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||     
T  22610422 ttacgttaattcaatggattacctactctttcaacaatcaattttacaaattaaccataatttctataacatcaaaactaacaaaataacatgttaaacc 22610323  T
Q  203 cnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |            ||||||||||||| ||||||||||||||| |||||| ||||||| |||||    
T  22610322 c------ctttttagaatcatacaactcattattagagaaagttagtcccacccttaccttag 22610266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 23884065 - 23884166
Alignment:
Q  104 ttacgttaattcaatgatt-acctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa---aacaacatgttaa 199  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||||||| ||||||   |||||||||||||    
T  23884065 ttacgttaattcaatgatttacctactctttcaacaatcaattgtgtaatttaaccctaatttctataacatcaaaactaacaaaagaacaacatgttaa 23884164  T
Q  200 ac 201  Q
    ||    
T  23884165 ac 23884166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 36732640 - 36732549
Alignment:
Q  104 ttacgttaattcaatgatt-acctactctttcaacaatcaattgtacaaattaaccctaatttctataac-atcaaaattaacaaaacaaca 193  Q
    |||||||||||||||| || ||||||||||||||||||||||| | |||||||||||||||||| ||||| ||| |||||||||||||||||    
T  36732640 ttacgttaattcaatggtttacctactctttcaacaatcaattttgcaaattaaccctaatttcaataacaatctaaattaacaaaacaaca 36732549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 264
Target Start/End: Original strand, 18834356 - 18834474
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaacatgttaaactcnnnnnnnnnnnnagaatcatacaacccattattag 238  Q
    ||||||| | ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |            |||||||||||| ||||||||||    
T  18834356 atcaattttgcaatttaaccctaatttctataacatcaaaactaacaaaacaacatgttaaaccc-------cttttagaatcatacaatccattattag 18834448  T
Q  239 agaaagctagtcctacccttatctta 264  Q
    ||||||||||||| ||||||| ||||    
T  18834449 agaaagctagtcccacccttacctta 18834474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 21399647 - 21399770
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca---tgttaaactcnnnnnnnnnnnnagaatcatacaacccattat 235  Q
    ||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||   |||||||| |            ||||||||||||||||||||    
T  21399647 atcaattttgcaatttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaaaccccttttt------agaatcatacaacccattat 21399740  T
Q  236 tagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||| ||||||| |||||    
T  21399741 tagagaaagctagtcccacccttaccttag 21399770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 21794140 - 21794263
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca---tgttaaactcnnnnnnnnnnnnagaatcatacaacccattat 235  Q
    ||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||   |||||||| |            ||||||||||||||||||||    
T  21794140 atcaattttgcaatttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaaaccccttttt------agaatcatacaacccattat 21794233  T
Q  236 tagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||| ||||||| |||||    
T  21794234 tagagaaagctagtcccacccttaccttag 21794263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 36305900 - 36305970
Alignment:
Q  104 ttacgttaattcaatgatt-acctactctttcaacaatcaattgtacaaattaaccctaatttctataaca 173  Q
    |||||||||||||||| || ||||||||||||||||||||| | | |||||||||||||||||||||||||    
T  36305900 ttacgttaattcaatggtttacctactctttcaacaatcaactttgcaaattaaccctaatttctataaca 36305970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 13660872 - 13660797
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||| ||| | | ||||||| || |||||||||||||||||||||||||||||||||||||    
T  13660872 tagtcccacccttaccttatgattaacaatcggcaacctttcctctttggttcttctcctctcttgttttctccct 13660797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 13719515 - 13719440
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||| ||| | | ||||||| || |||||||||||||||||||||||||||||||||||||    
T  13719515 tagtcccacccttaccttatgattaacaatcggcaacctttcctctttggttcttctcctctcttgttttctccct 13719440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 17906897 - 17906792
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    |||||||||||||  |  ||||||||||| |||||| ||||||| |||||| ||||||||||  |||   |||||||||||||| ||| ||||||| |||    
T  17906897 agaatcatacaacttagaattagagaaagttagtcccacccttaccttaggttaatcgatcgaaagcttctcctctttggttctcctcttctcttggttt 17906798  T
Q  316 ctccct 321  Q
    ||||||    
T  17906797 ctccct 17906792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 22345169 - 22345217
Alignment:
Q  217 gaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  22345169 gaatcatacaacccattattagagaaagctagtcccacccttaccttag 22345217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 22356829 - 22356877
Alignment:
Q  217 gaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  22356829 gaatcatacaacccattattagagaaagctagtcccacccttaccttag 22356877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 22208273 - 22208322
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  22208273 agaattatacaacccattattagagaaagctagtcccacccttaccttag 22208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 23889803 - 23889908
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    ||||| |||||||| |  ||||||||||| || ||  ||||||| |||||| ||||||||||  |||   |||||||||||||||||| ||||||| |||    
T  23889803 agaattatacaacctagaattagagaaagttaatctcacccttagcttaggttaatcgatcgaaagcttatcctctttggttcttctcttctcttggttt 23889902  T
Q  316 ctccct 321  Q
    ||||||    
T  23889903 ctccct 23889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 22483790 - 22483833
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctaccctta 259  Q
    ||||| |||||||||||||||||||||||||||||| |||||||    
T  22483790 agaattatacaacccattattagagaaagctagtcccaccctta 22483833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 36732460 - 36732410
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttagg 266  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| ||||||    
T  36732460 agaattatacaacccattattagagaaagctagtcacacccttaccttagg 36732410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 17218726 - 17218806
Alignment:
Q  236 tagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    ||||||||| |||||| ||||||||||||     ||||||||  |||   |||||||||||||||||| |||||||||||||||||    
T  17218726 tagagaaagttagtcccacccttatctta-----atcgatcgcaagcttctcctctttggttcttctcttctcttgttttctccct 17218806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 18816343 - 18816295
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||| ||||    
T  18816343 agaattatacaacccatttttagagaaagctagtcccacccttacctta 18816295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 19700195 - 19700270
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||||| |||||||| |  |||   |||||||||||||||||| ||||||| |||||||||    
T  19700195 tagtcccacccttaccttaggttaatcgattgcaagcttctcctctttggttcttctcttctcttggtttctccct 19700270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 22254788 - 22254871
Alignment:
Q  234 attagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttct 317  Q
    ||||||||||| |||||| ||| ||| |||||| ||||||||||  |||   ||||| |||||||||||| ||||||| |||||    
T  22254788 attagagaaagttagtcccaccattaccttaggttaatcgatcgaaagcttatcctccttggttcttctcttctcttggtttct 22254871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 16412653 - 16412585
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    |||||| ||||||| |||| ||| | |||||||||||| ||||||  ||||||||||| |||||||||||    
T  16412653 tagtcccacccttaccttaagattaacgatcggcagcctttcctc-atggttcttctcttctcttgtttt 16412585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 22966707 - 22966744
Alignment:
Q  104 ttacgttaattcaatgatt-acctactctttcaacaat 140  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22966707 ttacgttaattcaatgatttacctactctttcaacaat 22966744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 23948267 - 23948372
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    |||||||||||||  |  |||| |||| | |||| | ||||||| |||||| |||||||| |  |||   |||||||||||||||||| ||||||| |||    
T  23948267 agaatcatacaacttagaattaaagaaggttagtaccacccttaccttaggttaatcgattgaaagcttctcctctttggttcttctcttctcttggttt 23948366  T
Q  316 ctccct 321  Q
    ||||||    
T  23948367 ctccct 23948372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 4380723 - 4380691
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  4380723 taaccctaatttctataacatcaaaactaacaa 4380691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 18816401 - 18816369
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  18816401 taaccctaatttctataacatcaaaactaacaa 18816369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 21514637 - 21514669
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  21514637 taaccctaatttctataacatcaaaactaacaa 21514669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 21514695 - 21514743
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| ||||||| |||||||||||||| ||||||| ||||||| ||||    
T  21514695 agaattatacaactcattattagagaaatctagtcccacccttacctta 21514743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 104 - 265
Target Start/End: Complemental strand, 3527311 - 3527156
Alignment:
Q  104 ttacgttaattcaatga-ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaacatgttaaact 202  Q
    ||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  3527311 ttacgttaattcaatggcttacctactctttcaacaatcaatc-tacaaattaaccctaatttctataacatcaaaactaacaaaacaacatgttaaacc 3527213  T
Q  203 cnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |            | |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  3527212 c------ctttttaaaatcatacaacccattattagagaaagctagtcccacccttaccttag 3527156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 22841423 - 22841351
Alignment:
Q  121 ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||    
T  22841423 ttacctactctttcaacaatcaattctacaaattaaccctaatttctataacctcaaaactaacaaaacaaca 22841351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 13522408 - 13522333
Alignment:
Q  131 tttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaa---caacatgttaaactc 203  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  13522408 tttcaacaatcaattctataaattaaccctaatttctataacatcaaaattaacaaaacatcaacatgttaaactc 13522333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 6156641 - 6156763
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca---tgttaaactcnnnnnnnnnnnnagaatcatacaacccattat 235  Q
    ||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||   |||||||| |            ||||||||||||||||||||    
T  6156641 atcaattctgcaatttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaaacccctttt-------agaatcatacaacccattat 6156733  T
Q  236 tagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||| ||||||| |||||    
T  6156734 tagagaaagctagtcccacccttaccttag 6156763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 139 - 264
Target Start/End: Complemental strand, 54875596 - 54875474
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca---tgttaaactcnnnnnnnnnnnnagaatcatacaacccattat 235  Q
    ||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||   |||||||| |            ||||||||||||||||||||    
T  54875596 atcaattttgcaatttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaaaccccttttt------agaatcatacaacccattat 54875503  T
Q  236 tagagaaagctagtcctacccttatctta 264  Q
    |||||||||||||||| ||||||| ||||    
T  54875502 tagagaaagctagtcccacccttacctta 54875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 12917354 - 12917305
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  12917354 agaatcatacaacccattattagagaaagttagtcccacccttatcttag 12917305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 17684957 - 17684824
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaac---atgttaaactcnnnnnnnnnnnnagaatcatacaacccattat 235  Q
    ||||||| | ||| ||||||||||||||||||||||||||| ||||||||||||   ||||||||| |            ||||||||||||||||||||    
T  17684957 atcaattttgcaatttaaccctaatttctataacatcaaaactaacaaaacaacaagatgttaaaccc------ctttttagaatcatacaacccattat 17684864  T
Q  236 tagagaaagctagtcctacccttatcttaggataatcgat 275  Q
    || ||||| ||||||| ||||||| |||| || |||||||    
T  17684863 tacagaaaactagtcccacccttaccttaagaaaatcgat 17684824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 6159335 - 6159458
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca---tgttaaactcnnnnnnnnnnnnagaatcatacaacccattat 235  Q
    ||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||   |||||||| |            ||||||||||||||||||||    
T  6159335 atcaattctgcaatttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaaaccccttttt------agaatcatacaacccattat 6159428  T
Q  236 tagagaaagctagtcctacccttatcttag 265  Q
    |||||||||| ||||  ||||||| |||||    
T  6159429 tagagaaagcgagtctcacccttaccttag 6159458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 14442119 - 14442228
Alignment:
Q  153 ttaaccctaatttctataacatcaaaattaacaaaacaaca---tgttaaactcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagt 249  Q
    ||||||||||||||||||||||||||| |||||||||||||   ||||||||              |||||||||||||||||||||| |||||||||||    
T  14442119 ttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaaac------cgctttttagaatcatacaacccattattacagaaagctagt 14442212  T
Q  250 cctacccttatcttag 265  Q
    || ||||||| |||||    
T  14442213 cccacccttaccttag 14442228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 17669806 - 17669711
Alignment:
Q  153 ttaaccctaatttctataacatcaaaattaacaaaac---aacatgttaaactcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagt 249  Q
    ||||||||||||||||||||||||||| |||||||||   |||||||||||| |            ||||||||||||||||||||||||||||||||||    
T  17669806 ttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaaaccc------ctttttagaatcatacaacccattattagagaaagctagt 17669713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 2841554 - 2841505
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  2841554 agaatcatacaacccattattagagaaagctagtcacacccttaccttag 2841505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 14152447 - 14152386
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcg 277  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||| |||||| |||| |||||    
T  14152447 agaatgatacaactcattattagagaaagctagtcccacccttaccttaggttaatggatcg 14152386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 22841327 - 22841284
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctaccctta 259  Q
    ||||| |||||||||||||||||||||||||||||| |||||||    
T  22841327 agaattatacaacccattattagagaaagctagtcccaccctta 22841284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 12151085 - 12151028
Alignment:
Q  121 ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaa 179  Q
    |||||||| ||||||||||||||||  | ||||||||||||| ||||||||||||||||    
T  12151085 ttacctacactttcaacaatcaatttga-aaattaaccctaacttctataacatcaaaa 12151028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 12155165 - 12155105
Alignment:
Q  121 ttacctactctttcaacaatcaattg--tacaaattaaccctaatttctataacatcaaaa 179  Q
    |||||||| ||||||||||||||||   | |||||||||||||| ||||||||||||||||    
T  12155165 ttacctacactttcaacaatcaattaattgcaaattaaccctaacttctataacatcaaaa 12155105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 14520450 - 14520499
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||| |||||    
T  14520450 agaattatacaacccattattaaagaaagctagtcccacccttaccttag 14520499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 14641596 - 14641547
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||| |||||    
T  14641596 agaattatacaacccattattagagaaagctaatcccacccttaccttag 14641547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 17208528 - 17208577
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||| |||||    
T  17208528 agaattatacaactcattattagagaaagctagtcccacccttaccttag 17208577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 45803379 - 45803338
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctaccct 257  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  45803379 agaattatacaacccattattagagaaagctagtcccaccct 45803338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 46823085 - 46823153
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    |||||| ||||||| |||| ||| | |||||||||||| |||||| |||||||||||| |||||||||||    
T  46823085 tagtcccacccttaccttaagattaacgatcggcagcctttcctc-ttggttcttctcttctcttgtttt 46823153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 2841628 - 2841563
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaac---aacatgttaaac 201  Q
    ||||||| | ||| ||||| ||||||||||||||||||||| |||||||||   ||||||||||||    
T  2841628 atcaattctgcaatttaactctaatttctataacatcaaaactaacaaaacaacaacatgttaaac 2841563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 3160765 - 3160707
Alignment:
Q  120 attacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaa 179  Q
    |||||||||||||||||||||||| | | ||| |||| |||||||||||||| |||||||    
T  3160765 attacctactctttcaacaatcaaat-tgcaatttaaacctaatttctataatatcaaaa 3160707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 24549057 - 24549011
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaaaacaacatgttaaac 201  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||||    
T  24549057 taaccctaatttctataacatc-aaactaacaaaacaacatattaaac 24549011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 46752140 - 46752214
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||||||| | ||||||||||||  || || |||||||||||| | |||||||||||||||    
T  46752140 tagtcccacccttaccttaggattaacgatcggcagcctctcttc-ttggttcttctcttatcttgttttctccct 46752214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 50755360 - 50755311
Alignment:
Q  155 aaccctaatttctataacatcaaaattaacaa---aacaacatgttaaac 201  Q
    ||||||||||||||||||||||||| ||||||   |||||||||||||||    
T  50755360 aaccctaatttctataacatcaaaactaacaaagcaacaacatgttaaac 50755311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 24547204 - 24547238
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtc 250  Q
    ||||||||||||||||||||||||||||| |||||    
T  24547204 agaatcatacaacccattattagagaaagatagtc 24547238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 10379963 - 10380031
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    |||||| ||||||| |||| ||| | |||||| ||||| |||||||| |||||||||| |||||||||||    
T  10379963 tagtcccacccttaccttaagattaacgatcgacagcctttcctctt-ggttcttctcttctcttgtttt 10380031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 16050931 - 16050992
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcg 277  Q
    |||||||||||||  |  ||||||||||| |||||| ||||||| |||||| ||||||||||    
T  16050931 agaatcatacaacttagaattagagaaagttagtcccacccttaccttaggttaatcgatcg 16050992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 29907643 - 29907692
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||| ||||| ||||||||||||| ||||||| |||||    
T  29907643 agaattatacaacccaatattaaagaaagctagtcccacccttaccttag 29907692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 29948809 - 29948858
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||| ||||| ||||||||||||| ||||||| |||||    
T  29948809 agaattatacaacccaatattaaagaaagctagtcccacccttaccttag 29948858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 29997963 - 29998012
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||| ||||| ||||||||||||| ||||||| |||||    
T  29997963 agaattatacaacccaatattaaagaaagctagtcccacccttaccttag 29998012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 17208470 - 17208502
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  17208470 taaccctaatttctataacatcaaaactaacaa 17208502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 18366526 - 18366458
Alignment:
Q  253 acccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    ||||||| |||||| ||||||||||  |||   ||||| |||||||||||| ||||||| |||||||||    
T  18366526 acccttaccttaggttaatcgatcgaaagcttctcctccttggttcttctcttctcttggtttctccct 18366458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 48631232 - 48631303
Alignment:
Q  108 gttaattcaatga-ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaa 179  Q
    ||||||||| ||| |||||||| ||||||||||||||||   ||| |||||||| | ||||||||||||||||    
T  48631232 gttaattcattgaattacctacactttcaacaatcaatt-agcaatttaaccctgacttctataacatcaaaa 48631303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 8276037 - 8275932
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    ||||| |||| || |||||||||| ||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8276037 agaattataccactcattattagataaagctagtcacacccttaccttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 8275938  T
Q  316 ctccct 321  Q
    ||||||    
T  8275937 ctccct 8275932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 34392662 - 34392821
Alignment:
Q  104 ttacgttaattcaatg-attacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa---aacaacatgttaa 199  Q
    |||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||   |||||||||||||    
T  34392662 ttacgttaattcaatggattacctactctttcaacaatcaattttgcaatttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaa 34392761  T
Q  200 actcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    || |            |||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  34392762 accc------ctttttagaatcatacaacccattattagagaaagctagtcacacccttaccttag 34392821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 45499436 - 45499595
Alignment:
Q  104 ttacgttaattcaat-gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa---aacaacatgttaa 199  Q
    ||||||||| ||||| | ||||||||||||||||||||||| | | ||| |||||||||||||||||||| | |||| ||||||   |||||||||||||    
T  45499436 ttacgttaaatcaatagtttacctactctttcaacaatcaactttgcaatttaaccctaatttctataacgttaaaactaacaaaacaacaacatgttaa 45499535  T
Q  200 actcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    || |            |||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  45499536 accc------ctttatagaatcatacaacccattattagagaaagctagtctcacccttaccttag 45499595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 8306516 - 8306659
Alignment:
Q  119 gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaac---aacatgttaaactcnnnnnnnnnnnn 215  Q
    ||||||||||||||||||||||||||| ||      ||||||||||||||||||||||||| |||||||||   |||||||||||| |                
T  8306516 gattacctactctttcaacaatcaattttaatttcaaaccctaatttctataacatcaaaactaacaaaacgacaacatgttaaaccccttttt------ 8306609  T
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||| || |||| |||||    
T  8306610 agaattatacaacccattattagagaaagctagtcccactcttaccttag 8306659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 264
Target Start/End: Original strand, 20588566 - 20588690
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaac---aacatgttaaactcnnnnnnnnnnnnagaatcatacaacccattat 235  Q
    ||||||| | ||| ||||||||||||||||||||||||||| |||||||||   |||||||||||| |            ||||||||||||||||||||    
T  20588566 atcaattttgcaatttaaccctaatttctataacatcaaaactaacaaaacaaaaacatgttaaaccc----ttttttttagaatcatacaacccattat 20588661  T
Q  236 tagagaaagctagtcctacccttatctta 264  Q
    |||||||||||| ||| ||||||| ||||    
T  20588662 tagagaaagctaatcccacccttacctta 20588690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 264
Target Start/End: Original strand, 20593104 - 20593228
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaac---aacatgttaaactcnnnnnnnnnnnnagaatcatacaacccattat 235  Q
    ||||||| | ||| ||||||||||||||||||||||||||| |||||||||   |||||||||||| |            ||||||||||||||||||||    
T  20593104 atcaattttgcaatttaaccctaatttctataacatcaaaactaacaaaacaaaaacatgttaaaccc----ttttttttagaatcatacaacccattat 20593199  T
Q  236 tagagaaagctagtcctacccttatctta 264  Q
    |||||||||||| ||| ||||||| ||||    
T  20593200 tagagaaagctaatcccacccttacctta 20593228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 35895103 - 35895152
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||    
T  35895103 agaatcatacaacccattattagataaagctagtcctacccataccttag 35895152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 311
Target Start/End: Complemental strand, 38056720 - 38056627
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttg 311  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||| |||| ||| | ||||||||| ||  || || |||||||||||| |||||||    
T  38056720 agaattatacaacccattactagagaaagctagtcccacccttacctta-gattaacgatcggcaacctctcttc-ttggttcttctcttctcttg 38056627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 17901842 - 17901793
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| |||||    
T  17901842 agaattatacaacccattattagagaaagctagtctcacccttaccttag 17901793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 50544876 - 50544925
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| |||||    
T  50544876 agaattatacaacccattattagagaaagctagtctcacccttaccttag 50544925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 24719558 - 24719523
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcc 251  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24719558 agaattatacaacccattattagagaaagctagtcc 24719523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 635052 - 635003
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||| ||||||||||||||||||||  ||||||| |||||    
T  635052 agaattatacaacctattattagagaaagctagtctcacccttaccttag 635003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 28476782 - 28476733
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||| |||||||||||||| ||||||| ||||||| |||||    
T  28476782 agaattatacaactcattattagagaaatctagtcccacccttaccttag 28476733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 45755524 - 45755629
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    ||||||||| |||  || |||| |||| | |||||  ||||||| |||||| |||||||| |  |||   |||||||||||| ||||| |||||||||||    
T  45755524 agaatcatataacttataattaaagaaggttagtctcacccttaccttaggttaatcgattgcaagcttctcctctttggttattctcttctcttgtttt 45755623  T
Q  316 ctccct 321  Q
    ||||||    
T  45755624 ctccct 45755629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 51477027 - 51477100
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctcc 319  Q
    |||||| ||||||| |||||| ||||||||||  |||   ||||| |||||||||||| ||||||| |||||||    
T  51477027 tagtcccacccttaccttaggttaatcgatcgaaagcttctcctccttggttcttctcttctcttggtttctcc 51477100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 21188173 - 21188114
Alignment:
Q  119 gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaa 179  Q
    |||||||||| |||||||||||||| | | ||| |||| ||||| ||||||||||||||||    
T  21188173 gattacctacactttcaacaatcaaat-tgcaatttaaacctaacttctataacatcaaaa 21188114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 22145706 - 22145666
Alignment:
Q  224 acaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
T  22145706 acaacccattattagagaaagttagtcccacccttacctta 22145666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 28476840 - 28476808
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  28476840 taaccctaatttctataacatcaaaactaacaa 28476808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 9622383 - 9622542
Alignment:
Q  104 ttacgttaattcaatg-attacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa---aacaacatgttaa 199  Q
    |||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||   |||||||||||||    
T  9622383 ttacgttaattcaatggattacctactctttcaacaatcaattttgcaatttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaa 9622482  T
Q  200 actcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    || |            ||||||| |||||||||||||||||||||||||||| ||||||| |||||    
T  9622483 accc------ctttttagaatcagacaacccattattagagaaagctagtcccacccttaccttag 9622542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 13847205 - 13847307
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| |||||| |||||||| | ||||   | |||||||||||||||| | ||| |||||    
T  13847205 agaattatacaacccattattagagaaagctagtctcacccttaccttaggttaatcgattgacagcttcttctctttggttcttctcttatctggtttt 13847304  T
Q  316 ctc 318  Q
    |||    
T  13847305 ctc 13847307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 16296783 - 16296857
Alignment:
Q  119 gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    ||||||||||||||||||||||||||| ||      ||||||||||||||||||||||||| |||||||||||||    
T  16296783 gattacctactctttcaacaatcaattttaatttcaaaccctaatttctataacatcaaaactaacaaaacaaca 16296857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 55583126 - 55583249
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca---tgttaaactcnnnnnnnnnnnnagaatcatacaacccattat 235  Q
    ||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||   |||||||| |            | ||||||||||||||||||    
T  55583126 atcaattttgcaatttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaaaccccttttt------ataatcatacaacccattat 55583219  T
Q  236 tagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||| ||||||| |||||    
T  55583220 tagagaaagctagtcccacccttaccttag 55583249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 10273387 - 10273436
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  10273387 agaatcatacaacccattattagagaaagctagtcccacccttaccttag 10273436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 26446211 - 26446254
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctaccctta 259  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  26446211 agaattatacaacccattattagagaaagctagtcctaccctta 26446254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 27996825 - 27996899
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| ||||||||||||||| |||||||  || || |||||||||||| |||||||||||||||||    
T  27996825 tagtcccacccttaccttaggataatcgattggcagcctctcttc-ttggttcttctcttctcttgttttctccct 27996899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 12424338 - 12424290
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  12424338 agaattatacaacccattattagagaaagctagtcccacccttacctta 12424290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 15191215 - 15191285
Alignment:
Q  244 gctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    ||||||| |||||||| |||| ||| | |||||||||||| |||||| |||||||||||| |||||||||||    
T  15191215 gctagtcttacccttaccttaagattaacgatcggcagcctttcctc-ttggttcttctcttctcttgtttt 15191285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 21062663 - 21062750
Alignment:
Q  234 attagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    ||||||||||| |||||| ||||||| |||||| |||||||||   |||   ||||| |||||||||||| ||||||| |||||||||    
T  21062663 attagagaaagttagtcccacccttaccttaggctaatcgatcaaaagcttctcctccttggttcttctcttctcttggtttctccct 21062750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 14631139 - 14631188
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| |||||    
T  14631139 agaattatacaacccattattagagaaagctagtctcacccttaccttag 14631188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 16296942 - 16296991
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||| |||||    
T  16296942 agaattatacaactcattattagagaaagctagtcccacccttaccttag 16296991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 14477544 - 14477603
Alignment:
Q  119 gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaa 179  Q
    |||||||||| |||||||||||||| | | ||| |||||||||| ||||||||||||||||    
T  14477544 gattacctacactttcaacaatcaaattt-caatttaaccctaacttctataacatcaaaa 14477603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 35660966 - 35661002
Alignment:
Q  222 atacaacccattattagagaaagctagtcctaccctt 258  Q
    |||||||||||||||||||||||||||||| ||||||    
T  35660966 atacaacccattattagagaaagctagtcccaccctt 35661002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 51993595 - 51993670
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||||| |||||||| |  |||   ||||||| |||||||||| |||||||||||||||||    
T  51993595 tagtcccacccttaccttaggttaatcgattgaaagcttctcctcttaggttcttctcttctcttgttttctccct 51993670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 33186907 - 33186941
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtc 250  Q
    ||||| |||||||||||||||||||||||||||||    
T  33186907 agaattatacaacccattattagagaaagctagtc 33186941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 9639022 - 9639063
Alignment:
Q  224 acaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||| ||||||| |||||    
T  9639022 acaactcattattagagaaagctagtcccacccttaccttag 9639063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 19739779 - 19739839
Alignment:
Q  253 acccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttt 314  Q
    ||||||| ||||||||||||||| |||||||  || || |||||||||||| ||||||||||    
T  19739779 acccttaccttaggataatcgattggcagcctctcttc-ttggttcttctcttctcttgttt 19739839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 25513855 - 25513904
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||| |||||||||||||||||||||| ||| ||| |||||    
T  25513855 agaattatacaactcattattagagaaagctagtcccaccattaccttag 25513904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 14631081 - 14631113
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  14631081 taaccctaatttctataacatcaaaactaacaa 14631113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 25513797 - 25513829
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  25513797 taaccctaatttctataacatcaaaactaacaa 25513829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 26446153 - 26446185
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  26446153 taaccctaatttctataacatcaaaactaacaa 26446185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 18570542 - 18570700
Alignment:
Q  104 ttacgttaattcaatgattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca---tgttaaa 200  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| |||||||||||||   |||||||    
T  18570542 ttacgttaattcaatggttacctactctttcaacaatcaattctacaaattaaccataacttctataacatcaaaactaacaaaacaacaatatgttaaa 18570641  T
Q  201 ctcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    | |            |||||| ||||||||||||||||||||||||||||  ||||||| |||||    
T  18570642 cccctttct------agaatcttacaacccattattagagaaagctagtctcacccttaccttag 18570700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 8930920 - 8930833
Alignment:
Q  107 cgttaattcaatgatt-acctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    ||||||||||||| || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||    
T  8930920 cgttaattcaatggtttacctactctttcaacaatcaattttgcaaattaaccctaatttctataacatcaaaactaacaaaacaaca 8930833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 265
Target Start/End: Complemental strand, 13744665 - 13744509
Alignment:
Q  104 ttacgttaattcaat-gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaacatgttaaact 202  Q
    ||||||||| ||||| | |||||| |||||||||| ||||| | | |||||||||||||||||||||||||| |||| |||||||||||||||||||||     
T  13744665 ttacgttaaatcaatagtttaccttctctttcaacgatcaactttgcaaattaaccctaatttctataacattaaaaataacaaaacaacatgttaaacc 13744566  T
Q  203 cnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |            ||||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  13744565 c------ctttttagaatcataaaacccattattagagaaagctagtcccacccttaccttag 13744509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 104 - 265
Target Start/End: Complemental strand, 33556262 - 33556104
Alignment:
Q  104 ttacgttaattcaatga--ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa---aacaacatgtta 198  Q
    ||||||||||||||||   ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| ||| ||||||   ||||||||||||    
T  33556262 ttacgttaattcaatggatttacctactctttcaacaatcaatttttcaa-ttaaccctaatttctataacatc-aaactaacaaaacaacaacatgtta 33556165  T
Q  199 aactcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||| |            |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33556164 aaccc------ctttttagaatcatacaacccattattagagaaagctagtcccacccttatcttag 33556104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 104 - 250
Target Start/End: Complemental strand, 36300796 - 36300655
Alignment:
Q  104 ttacgttaattcaatg-attacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaacatgttaaact 202  Q
    |||||||||||||||| ||||||||||||||||||| | |||| | ||| |||||||||||| ||||| |||||||| |||||||| ||||||||||||     
T  36300796 ttacgttaattcaatggattacctactctttcaacagttaattttgcaatttaaccctaattcctatatcatcaaaactaacaaaataacatgttaaacc 36300697  T
Q  203 cnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtc 250  Q
    |            |||||||||||||||||||||||||||||||||||    
T  36300696 c------ctttttagaatcatacaacccattattagagaaagctagtc 36300655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 139 - 265
Target Start/End: Complemental strand, 58532 - 58412
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaacatgttaaactcnnnnnnnnnnnnagaatcatacaacccattattag 238  Q
    ||||||| | ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| |            |||||||||||||||||||||||    
T  58532 atcaattttgcaatttaaccctaatttctttaacatcaaaactaacaaaacaacatgttaaaccc------ctttttagaatcatacaacccattattag 58439  T
Q  239 agaaagctagtcctacccttatcttag 265  Q
    ||||||||||||| ||||||| |||||    
T  58438 agaaagctagtcccacccttaccttag 58412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 15700890 - 15700792
Alignment:
Q  104 ttacgttaattcaat-gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa-aacaacatgttaaac 201  Q
    ||||||||||||||| | ||||||||||||||||||| ||||| | ||| |||||||||||||||||||||| |||| |||||| ||| |||||||||||    
T  15700890 ttacgttaattcaatagtttacctactctttcaacaaccaattttgcaa-ttaaccctaatttctataacattaaaactaacaacaactacatgttaaac 15700792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 264
Target Start/End: Original strand, 25943163 - 25943319
Alignment:
Q  104 ttacgttaattcaatgatt-acctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaac---atgttaa 199  Q
    |||| ||||||||||| || ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| || |||||||||   |||||||    
T  25943163 ttacattaattcaatggtttacctactctttcaacaatcaattttgcaa-ttaaccctaatttctataacatcaaaacta-caaaacaacgaaatgttaa 25943260  T
Q  200 actcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    || |            | || ||||||||||||||||||||||||||||||| ||||||| ||||    
T  25943261 accccttttc------aaaaacatacaacccattattagagaaagctagtcccacccttacctta 25943319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 8488142 - 8488081
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcg 277  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||    
T  8488142 agaattatacaacccattattagagaaagttagtcccacccttaccttaggttaatcgatcg 8488081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 8513801 - 8513740
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcg 277  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||    
T  8513801 agaattatacaacccattattagagaaagttagtcccacccttaccttaggttaatcgatcg 8513740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 16250383 - 16250342
Alignment:
Q  104 ttacgttaattcaatgattacctactctttcaacaatcaatt 145  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  16250383 ttacgttaattcaatggttacctactctttcaacaatcaatt 16250342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 20252230 - 20252181
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  20252230 agaattatacaactcattattagagaaagctagtcctacccttaccttag 20252181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 38299752 - 38299801
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  38299752 agaattatacaacccattattagagaaagctagtcccacccttaccttag 38299801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 4071842 - 4071929
Alignment:
Q  234 attagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    ||||||||||| |||||| ||||||| |||||| ||||||||||  |||   ||||||||| |||| ||| ||||||| |||||||||    
T  4071842 attagagaaagttagtcccacccttaccttaggttaatcgatcgaaagcttctcctctttgattctcctcttctcttggtttctccct 4071929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 13315219 - 13315081
Alignment:
Q  121 ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaacatgttaaactcnnnnnnnnnnnnagaat 220  Q
    ||||||||||||||||||||||||| ||      || ||||||||||  |  ||||||||||||||||||||||||||||| |            |||||    
T  13315219 ttacctactctttcaacaatcaattttaatttcaaaacctaatttctcaacaatcaaaattaacaaaacaacatgttaaaccccttttc------agaat 13315126  T
Q  221 catacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||||||||||| |||||  ||||||| |||||    
T  13315125 catacaacccattattagagaaagatagtctcacccttaccttag 13315081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 35771471 - 35771384
Alignment:
Q  234 attagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    ||||||||||| |||||| ||||||| |||||| |||||||| |  |||   |||||||||||||| ||| ||||||| |||||||||    
T  35771471 attagagaaagttagtcccacccttaccttaggttaatcgatagaaagcttctcctctttggttctcctcttctcttggtttctccct 35771384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 15720709 - 15720763
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    ||||||| | ||| |||||| |||||||||||||||||||| |||||||||||||    
T  15720709 atcaattttgcaatttaaccataatttctataacatcaaaactaacaaaacaaca 15720763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 708477 - 708428
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||| |||| || |||||    
T  708477 agaattatacaacccattattagagaaagctagtcccacccctaccttag 708428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 8930813 - 8930764
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| |||||    
T  8930813 agaatcatacaacccattattagagaaatgtagtcccacccttaccttag 8930764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 15575697 - 15575648
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||| |||| || |||||    
T  15575697 agaattatacaacccattattagagaaagctagtcccacccctaccttag 15575648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 18874713 - 18874664
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| |||||    
T  18874713 agaattatacaacccattattagagaaagctagtctcacccttaccttag 18874664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 19195615 - 19195664
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||| |||||    
T  19195615 agaattatacaactcattattagagaaagctagtcccacccttaccttag 19195664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 33002157 - 33002262
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    |||||||||||||  |  ||||||||||| |||||| ||||||| |||| | || ||||| |  |||   ||||||| |||||||||| |||||||||||    
T  33002157 agaatcatacaacttagaattagagaaagttagtccgacccttaccttaagttagtcgattgcaagcttctcctcttaggttcttctcttctcttgtttt 33002256  T
Q  316 ctccct 321  Q
    ||||||    
T  33002257 ctccct 33002262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 47095456 - 47095505
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| || ||||||||||||||||||||||||||| ||||||| |||||    
T  47095456 agaattattcaacccattattagagaaagctagtcccacccttaccttag 47095505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 15720783 - 15720831
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||| ||||    
T  15720783 agaatcatacaacccattatgagagaaagctagtcccacctttacctta 15720831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 43276792 - 43276744
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||| ||||    
T  43276792 agaattatacaacccattattagagaaagttagtcccacccttacctta 43276744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 43745666 - 43745710
Alignment:
Q  222 atacaacccattattagagaaagctagtcctacccttatcttagg 266  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||    
T  43745666 atacaactcattattagagaaagctagtcccacccttaccttagg 43745710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 11054747 - 11054822
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||||  ||||||||||  |||   |||||||||||||||||| ||||||| |||||||||    
T  11054747 tagtcccacccttaccttagtttaatcgatcgaaagcttctcctctttggttcttctcttctcttggtttctccct 11054822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 15289127 - 15289214
Alignment:
Q  234 attagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    ||||||||||| | |||| ||||||| |||||| ||||||||||  |||   |||||||||||||| ||  ||||||| |||||||||    
T  15289127 attagagaaagttggtcccacccttaccttaggttaatcgatcgaaagcttctcctctttggttctccttttctcttggtttctccct 15289214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 36704589 - 36704514
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||||  ||||||||||  |||   ||||| |||||||||||| |||||||||||||||||    
T  36704589 tagtcccacccttaccttagattaatcgatcgaaagcttctcctccttggttcttctcttctcttgttttctccct 36704514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 15700931 - 15700897
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtc 250  Q
    ||||||||||||| |||||||||||||||||||||    
T  15700931 agaatcatacaactcattattagagaaagctagtc 15700897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 48212775 - 48212725
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttagg 266  Q
    |||||||||||||| |||||| |||||||||||||  ||||||| ||||||    
T  48212775 agaatcatacaacctattattggagaaagctagtcacacccttaccttagg 48212725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 3287748 - 3287797
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||| ||||||||||||||||||||  ||||||| |||||    
T  3287748 agaattatacaacctattattagagaaagctagtctcacccttaccttag 3287797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 15700783 - 15700750
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagt 249  Q
    |||| |||||||||||||||||||||||||||||    
T  15700783 agaaccatacaacccattattagagaaagctagt 15700750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 15575755 - 15575723
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  15575755 taaccctaatttctataacatcaaaactaacaa 15575723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 48212835 - 48212803
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  48212835 taaccctaatttctataacatcaaaactaacaa 48212803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 25584251 - 25584179
Alignment:
Q  121 ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  25584251 ttacctactctttcaacaatcaattctacaaattaaccctaatttctataacatcaaaactaacaaaacaaca 25584179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 28345115 - 28344987
Alignment:
Q  131 tttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaacatgttaaactcnnnnnnnnnnnnagaatcatacaaccc 230  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |            ||||||||||| |||    
T  28345115 tttcaacaatcaattttgcaaattaaccctaatttctataacatcgaaactaacaaaacaacatgttaaaccc------ctttttagaatcatacagccc 28345022  T
Q  231 attattagagaaagctagtcctacccttatcttag 265  Q
    ||||||||||||||||||||  |||||||||||||    
T  28345021 attattagagaaagctagtcacacccttatcttag 28344987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 23801500 - 23801549
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  23801500 agaatcatacaacccattattagagaaagctagtcccacccttaccttag 23801549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 149646 - 149561
Alignment:
Q  119 gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaa---acaacatgttaaac 201  Q
    ||||||||||||||||||||||||||| ||      ||||||||||||||||||||||||| |||||||   ||||||||||||||    
T  149646 gattacctactctttcaacaatcaattttaatttcaaaccctaatttctataacatcaaaactaacaaaacgacaacatgttaaac 149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 21315524 - 21315475
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  21315524 agaattatacaacccattattagagaaagctagtcccacccttaccttag 21315475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 21335314 - 21335265
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  21335314 agaattatacaacccattattagagaaagctagtcccacccttaccttag 21335265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 23610636 - 23610680
Alignment:
Q  222 atacaacccattattagagaaagctagtcctacccttatcttagg 266  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||    
T  23610636 atacaacccattattagagaaagctagtcccacccttaccttagg 23610680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 24792777 - 24792702
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||||||| | ||||  ||| ||  |||||||||||||||||| |||||||||||||||||    
T  24792777 tagtcccacccttaccttaggattaacgatttgcaacctctcctctttggttcttctcttctcttgttttctccct 24792702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 24834041 - 24833972
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    |||||| ||||||| |||||||| | ||||||| | ||  |||||||||||||||||| |||||||||||    
T  24834041 tagtcccacccttaccttaggattaacgatcggtatcctctcctctttggttcttctcttctcttgtttt 24833972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 34491401 - 34491312
Alignment:
Q  104 ttacgttaattcaatga--ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    ||||||||||||||||   |||| |||||||| ||||||||||| | ||| |||||||||| || ||||||||||||| | |||||||||||    
T  34491401 ttacgttaattcaatggatttacttactcttttaacaatcaattttgcaa-ttaaccctaaattttataacatcaaaact-acaaaacaaca 34491312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 149549 - 149500
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||| |||||||||||||||||||| | ||||||| |||||    
T  149549 agaattatacaactcattattagagaaagctagttccacccttaccttag 149500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 5986213 - 5986286
Alignment:
Q  248 gtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||| ||||||| |||||| |||||||| |  |||   ||||||| |||||||||| |||||||||||||||||    
T  5986213 gtcccacccttaccttaggttaatcgattgcaagcttctcctcttaggttcttctcttctcttgttttctccct 5986286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 21369297 - 21369346
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||| |||||||||||| |||| ||||||| |||||    
T  21369297 agaattatacaacccattgttagagaaagcttgtcccacccttaccttag 21369346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 32214268 - 32214200
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    |||||| ||||||| |||| ||| | |||| ||||||| |||||||| |||||||||| |||||||||||    
T  32214268 tagtcccacccttaccttaagattaacgattggcagcctttcctctt-ggttcttctcttctcttgtttt 32214200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 28652658 - 28652626
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  28652658 taaccctaatttctataacatcaaaactaacaa 28652626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 104 - 265
Target Start/End: Complemental strand, 127501 - 127342
Alignment:
Q  104 ttacgttaattcaatgatt-acctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaac---aacatgttaa 199  Q
    |||||||||||||||| || ||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |||||||||   ||||||||||    
T  127501 ttacgttaattcaatggtttacctactctttcaacaatcaattttgcaaagtaaccctaatctctataacatcaaaactaacaaaacaacaacatgttaa 127402  T
Q  200 actcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    || |            |||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  127401 accc------ctttttagaatcatacaatccattattagagaaagctagtcccacccttaccttag 127342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 12381 - 12464
Alignment:
Q  104 ttacgttaattcaatgatt-acctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa 186  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  12381 ttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacatcaaaactaacaa 12464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 10446108 - 10446270
Alignment:
Q  104 ttacgttaattcaatgatt-acctact---ctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa---aacaacatgt 196  Q
    |||||||||||||||| || |||||||   |||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||   ||||||||||    
T  10446108 ttacgttaattcaatgctttacctactgatctttcaacaatcaattttgcaaattaaccctaatttctataacatcgaaactaacaaaacaacaacatgt 10446207  T
Q  197 taaactcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |            |||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  10446208 taaaccc------ctttttagaatcatacaacccattattagagaaagctagtcccacccttaccttag 10446270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 15998911 - 15998998
Alignment:
Q  234 attagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    ||||||||||| |||||  ||||||| |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||    
T  15998911 attagagaaagttagtctcacccttaccttaggataatcgaccgatagcccttcctctttggttcttctcctctcttgttttctccct 15998998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 1818848 - 1818924
Alignment:
Q  104 ttacgttaattcaatga-ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaa 179  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  1818848 ttacgttaattcaatgaattacctactctttcaacaatcaattttgcaatttaaccctaatttctataacatcaaaa 1818924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 16966807 - 16966875
Alignment:
Q  253 acccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    ||||||| |||||||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||    
T  16966807 acccttaacttaggataatcgatcggcagcctctcctctttgattcttctcttctcttgttttctccct 16966875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 18259192 - 18259118
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttg-ttttctcc 319  Q
    |||||| ||||||| ||||||||||||||| |||||||  ||||||||||||||| || ||||||| ||||||||    
T  18259192 tagtcccacccttaccttaggataatcgattggcagcctctcctctttggttcttttcttctcttgcttttctcc 18259118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 21683122 - 21683073
Alignment:
Q  217 gaatcatacaacccattattagagaaagctagtcctacccttatcttagg 266  Q
    |||| |||||||||||||||||||||||||||||| ||||||| ||||||    
T  21683122 gaattatacaacccattattagagaaagctagtcccacccttaccttagg 21683073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 23993053 - 23993121
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    |||||| ||||||| |||| ||| | |||||||||||| |||||| |||||||||||| |||||||||||    
T  23993053 tagtcccacccttaccttaagattaacgatcggcagcctttcctc-ttggttcttctcttctcttgtttt 23993121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 29045281 - 29045324
Alignment:
Q  222 atacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  29045281 atacaacccattattagagaaagctagtctcacccttaccttag 29045324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 19825534 - 19825485
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| || ||||||||||||||||||||||||||  ||||||| |||||    
T  19825534 agaattatgcaacccattattagagaaagctagtctcacccttaccttag 19825485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 23658093 - 23658142
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||| |||||||| |||||||||||| ||||||| |||||    
T  23658093 agaattatacaacctattattagggaaagctagtcccacccttaccttag 23658142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 31731930 - 31731857
Alignment:
Q  238 gagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttg 311  Q
    ||||||| |||||| ||||||| |||||| ||||||||||  |||   |||||||||||||| ||| |||||||    
T  31731930 gagaaagttagtcccacccttaccttaggttaatcgatcgaaagcttctcctctttggttctcctcttctcttg 31731857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 34964004 - 34964072
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    |||||| ||||||| |||| ||| | |||||||||||| |||||| |||||||||||| | |||||||||    
T  34964004 tagtcccacccttaccttaagattaacgatcggcagcctttcctc-ttggttcttctcttatcttgtttt 34964072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 15998835 - 15998867
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  15998835 taaccctaatttctataacatcaaaactaacaa 15998867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 20410560 - 20410512
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| |||||||||||||||||||||||||| | | ||||||| ||||    
T  20410560 agaattatacaacccattattagagaaagctatttccacccttacctta 20410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 24506255 - 24506196
Alignment:
Q  119 gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaa 179  Q
    |||||||||| ||||||||||| || | ||||| |||| ||||| ||||||||||||||||    
T  24506255 gattacctacactttcaacaattaaat-tacaatttaaacctaacttctataacatcaaaa 24506196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 19769 - 19909
Alignment:
Q  121 ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa---aacaacatgttaaactcnnnnnnnnnnnnag 217  Q
    ||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||| ||||||   ||||||||||||||| |            ||    
T  19769 ttacctactctttcaacaaccaattttgcaa-ttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaaaccc------ctttttag 19861  T
Q  218 aatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||    
T  19862 aatcatacaacccattattagagaaatctagtcctacccttaccttag 19909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 5458 - 5507
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||| ||||||||||||||| |||||| ||||||| |||||    
T  5458 agaattatacaactcattattagagaaaggtagtcccacccttaccttag 5507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 11620 - 11668
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| |||||||||||| |||||||||  |||||| ||||||||||||    
T  11620 agaattatacaacccatttttagagaaatttagtcccacccttatctta 11668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 265
Target Start/End: Complemental strand, 21398803 - 21398643
Alignment:
Q  104 ttacgttaattcaatga--ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaac---aacatgtta 198  Q
    ||||||||||||||||   ||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||| |||||||||   |||||||||    
T  21398803 ttacgttaattcaatggatttacctactctttcaacaaccaattttgcaa-ttaaccctaatttctataacatcaaaactaacaaaacaaaaacatgtta 21398705  T
Q  199 aactcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||| |            |||||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  21398704 aaccc-----cctttttagaatcatacaacccattattagagaaagctaatcccacccttaccttag 21398643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 22111873 - 22111962
Alignment:
Q  104 ttacgttaattcaat-gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    |||||||||||| || | ||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||| |||||||||||||    
T  22111873 ttacgttaattcgattgtttacctactctttcaacaaccaattttgcaa-ttaaccctaatttctataacatcaaaactaacaaaacaaca 22111962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 21914510 - 21914435
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||||| ||||||||||||||||  |||||||||||||| ||| ||||||| |||||||||    
T  21914510 tagtcccacccttaccttaggttaatcgatcggcagcctctcctctttggttctcctcttctcttggtttctccct 21914435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 265
Target Start/End: Complemental strand, 32607438 - 32607315
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca---tgttaaactcnnnnnnnnnnnnagaatcatacaacccattat 235  Q
    ||||||| | ||| ||||| ||||||||||||||||||||| |||||||||||||   |||||||| |            ||||||||||||||||||||    
T  32607438 atcaattttgcaatttaactctaatttctataacatcaaaactaacaaaacaacaacatgttaaaccccttttt------agaatcatacaacccattat 32607345  T
Q  236 tagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||| ||||||| |||||    
T  32607344 tagagaaagctagtcccacccttaccttag 32607315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 1627074 - 1626999
Alignment:
Q  104 ttacgttaattcaatgatt-acctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaa 179  Q
    |||||||||||||||| || ||||||||||||||||||||||| | ||||| ||| ||||||| || ||||||||||    
T  1627074 ttacgttaattcaatggtttacctactctttcaacaatcaattttgcaaataaactctaattt-tacaacatcaaaa 1626999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 23199255 - 23199207
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  23199255 agaattatacaacccattattagagaaagctagtcccacccttacctta 23199207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 25249846 - 25249771
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||||||||||| |||||| |||||||| |  |||   |||||||||||||||||| ||||||| |||||||||    
T  25249846 tagtcctacccttaccttaggttaatcgattgaaagcttctcctctttggttcttctcttctcttggtttctccct 25249771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 25313630 - 25313555
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||||||||||| |||||| |||||||| |  |||   |||||||||||||||||| ||||||| |||||||||    
T  25313630 tagtcctacccttaccttaggttaatcgattgaaagcttctcctctttggttcttctcttctcttggtttctccct 25313555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 16063755 - 16063804
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||| |||||    
T  16063755 agaattatacaacccattattagagaaaggtagtcccacccttaccttag 16063804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 18744878 - 18744927
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||| |||||    
T  18744878 agaattatacaacccattattagagaaagttagtcccacccttaccttag 18744927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 21504055 - 21504111
Alignment:
Q  123 acctactctttcaacaatcaattgtacaaatt-aaccctaatttctataacatcaaaa 179  Q
    |||||||||||||||||| |||| | |||||| |||||||||||||||||||||||||    
T  21504055 acctactctttcaacaatgaatt-tgcaaatttaaccctaatttctataacatcaaaa 21504111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 19616443 - 19616395
Alignment:
Q  273 gatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  19616443 gatcggcagcctctcctctttggttcttctcttctcttgttttatccct 19616395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 1627115 - 1627072
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctaccctta 259  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||    
T  1627115 agaattatacaactcattattagagaaagctagtcccaccctta 1627072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 1627174 - 1627142
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  1627174 taaccctaatttctataacatcaaaactaacaa 1627142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 10780 - 10705
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| ||||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||||    
T  10780 tagtcccacccttaccttaggataatcgatcggcggcctctcctctttggttcttctcttctcttgttttctccct 10705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 264
Target Start/End: Original strand, 10843 - 10999
Alignment:
Q  104 ttacgttaattcaat-gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa---aacaacatgttaa 199  Q
    |||| |||||||||| | ||||||||| ||||||||| ||||| | ||| ||||||||||||||||||||||||||| ||||||   |||||||||||||    
T  10843 ttacattaattcaatagtttacctactttttcaacaaccaattttgcaa-ttaaccctaatttctataacatcaaaactaacaaaacaacaacatgttaa 10941  T
Q  200 actcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    || |            |||||||||||||||||||||||||||||||||| | ||||||| ||||    
T  10942 accc-------tttttagaatcatacaacccattattagagaaagctagttccacccttacctta 10999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 3903 - 3837
Alignment:
Q  254 cccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||||||||||| |||||||  || |||| |||||||||| |||||||||||||||||    
T  3903 cccttaccttaggataatcgattggcagcctctcttctt-ggttcttctcttctcttgttttctccct 3837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 13903 - 13831
Alignment:
Q  248 gtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||| ||||||| ||||| ||||||||| |||||||  || |||| |||||||||| | |||||||||||||||    
T  13903 gtcccacccttaccttagaataatcgattggcagcctctcttctt-ggttcttctcttatcttgttttctccct 13831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 12236 - 12308
Alignment:
Q  134 caacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaa---caacatgttaaactc 203  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||   |||||||||||||||    
T  12236 caacaatcaattctacaaattaaccttaatttctataacatcaaaactaacaaaacttcaacatgttaaactc 12308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 75831 - 75990
Alignment:
Q  104 ttacgttaattcaat-gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa---aacaacatgttaa 199  Q
    ||||||||| ||||| | ||||||||||||||||||||||| | | ||||||| ||||||||  ||||||||||||| ||| ||   |||||||||||||    
T  75831 ttacgttaactcaatagtttacctactctttcaacaatcaactttgcaaattatccctaattcttataacatcaaaactaataaaacaacaacatgttaa 75930  T
Q  200 actcnnnnnnnnnnnnagaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    || |            ||||||||||||||||||||| |||||||||||||| ||||||| |||||    
T  75931 accc------ctttttagaatcatacaacccattattggagaaagctagtcccacccttaccttag 75990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 111364 - 111470
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctctt-gttt 314  Q
    ||||||||||||||||||||||||||||||||| || ||||||| |||||  ||||||||||  |||   |||||| ||||||| ||| |||||| ||||    
T  111364 agaatcatacaacccattattagagaaagctagccccacccttaccttagattaatcgatcgaaagcttctcctctctggttctcctcttctcttggttt 111463  T
Q  315 tctccct 321  Q
    |||||||    
T  111464 tctccct 111470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 72982 - 73071
Alignment:
Q  105 tacgttaattcaatga-ttacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    |||||||||||||||  ||||||||||||||||||||||| | | ||||||||||||||||  |||||||| |||| ||| |||||||||    
T  72982 tacgttaattcaatggcttacctactctttcaacaatcaactttgcaaattaaccctaattcttataacataaaaactaataaaacaaca 73071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 110219 - 110288
Alignment:
Q  104 ttacgttaattcaatgatt-acctactctttcaacaatcaattgtacaaattaaccctaatttctataac 172  Q
    |||||||||||||||| || |||||||||||||| |||||||| | ||||| ||||||||||||||||||    
T  110219 ttacgttaattcaatggtttacctactctttcaataatcaattttgcaaataaaccctaatttctataac 110288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 73091 - 73139
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||| ||||    
T  73091 agaatcatacaactcattattagagaaagttagtcccacccttacctta 73139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 66120 - 66071
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||| ||||| ||||||| ||||||| |||||    
T  66120 agaattatacaacccattattaaagaaatctagtcccacccttaccttag 66071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 8873 - 8814
Alignment:
Q  134 caacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    ||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  8873 caacagtcaattctaaaaattaaccctaatttctataacatcaaaactaacaaaacaaca 8814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 8794 - 8745
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||||||||||||||||||||||| |||||||||  ||||||| |||||    
T  8794 agaatcatacaacccattattagagtaagctagtctcacccttaccttag 8745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 19976 - 20063
Alignment:
Q  234 attagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    ||||||||||| |||||| ||||||| |||||| ||||||||||  |||  |||||| |||||||||||| ||||||| |||||||||    
T  19976 attagagaaagttagtcccacccttaccttaggttaatcgatcgaaagcttttcctccttggttcttctcttctcttggtttctccct 20063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 13960 - 14046
Alignment:
Q  223 tacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttg 311  Q
    ||||||||||||||||||||||||||||| ||||||| |||| ||| | ||||||||||||  || || |||||||||||| |||||||    
T  13960 tacaacccattattagagaaagctagtcccacccttacctta-gattaacgatcggcagcctctcttc-ttggttcttctcttctcttg 14046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 2726 - 2811
Alignment:
Q  119 gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaa---acaacatgttaaac 201  Q
    ||||||||||||||||||||||||||| ||      ||||||||||||||||||||||||| |||||||   ||||||||||||||    
T  2726 gattacctactctttcaacaatcaattttaatttcaaaccctaatttctataacatcaaaagtaacaaaacgacaacatgttaaac 2811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 2885 - 2934
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  2885 agaattatacaacccattattagagaaagctagtcccacccttaccttag 2934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 23544 - 23587
Alignment:
Q  222 atacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  23544 atacaacccattattagagaaagctagtcctacccttaccttag 23587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 22519 - 22464
Alignment:
Q  244 gctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttct 299  Q
    |||||||  ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  22519 gctagtctcacccttaccttagaataatcgatcggcagcccttcctctttggttct 22464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 40037 - 40091
Alignment:
Q  139 atcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    ||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||    
T  40037 atcaattctgcaatttaaccctaatttctataacatcaaaactaacaaaacaaca 40091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 40111 - 40145
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtc 250  Q
    ||||||||||||||||||||||||||||| |||||    
T  40111 agaatcatacaacccattattagagaaagttagtc 40145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 3470 - 3421
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| |||||    
T  3470 agaatcatacaacgcattattagagaaagctagtcccacccttaccttag 3421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 3528 - 3496
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  3528 taaccctaatttctataacatcaaaactaacaa 3496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1939 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 39 - 99
Alignment:
Q  119 gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaa 179  Q
    ||||||||||||||||||||||||||| |  |  |||||||||| ||||||||||||||||    
T  39 gattacctactctttcaacaatcaattttcaattttaaccctaacttctataacatcaaaa 99  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 2502 - 2454
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  2502 agaattatacaacccattattagagaaagctagtcccacccttacctta 2454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 5637 - 5685
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  5637 agaattatacaacccattattagagaaagctagtcccacccttacctta 5685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 11208 - 11160
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    |||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  11208 agaatcatacaacccattattagagaaagctagtcccatccttacctta 11160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 11267 - 11228
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaaaacaaca 193  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  11267 taaccctaatttatataacatcaaaactaacaaaacaaca 11228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 31142 - 31217
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||||| ||||||||||  | |   |||||||||||||||||| |||||||||||||||||    
T  31142 tagtcccacccttaccttaggttaatcgatcgaaatcttctcctctttggttcttctcttctcttgttttctccct 31217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 321
Target Start/End: Complemental strand, 5091 - 4988
Alignment:
Q  218 aatcatacaacccattattagagaaagctagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttct 317  Q
    |||||||||||  |  ||||||||||| |||||| ||||||| |||||| || ||||| |  |||   ||||||| |||||||||| |||||||||||||    
T  5091 aatcatacaacttagaattagagaaagttagtcccacccttaccttaggttagtcgattgcaagcttctcctcttaggttcttctcttctcttgttttct 4992  T
Q  318 ccct 321  Q
    ||||    
T  4991 ccct 4988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 17019 - 17077
Alignment:
Q  119 gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaa 178  Q
    ||||||||||||||||||||||||| | | |||||||| |||||||||||||| ||||||    
T  17019 gattacctactctttcaacaatcaaat-tgcaaattaaacctaatttctataatatcaaa 17077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 26550 - 26608
Alignment:
Q  119 gattacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaa 178  Q
    ||||||||||||||||||||||||| | | |||||||| |||||||||||||| ||||||    
T  26550 gattacctactctttcaacaatcaaat-tgcaaattaaacctaatttctataatatcaaa 26608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0730 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0730
Description:

Target: scaffold0730; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 6643 - 6518
Alignment:
Q  120 attacctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaaaacaacatgttaaactcnnnnnnnnnnnnagaa 219  Q
    |||||||||||||||||||||||||| ||      || ||||||||||  |  ||||||||||||||||||||||||||||| |            ||||    
T  6643 attacctactctttcaacaatcaattttaatttcaaaacctaatttctcaacaatcaaaattaacaaaacaacatgttaaaccccttttc------agaa 6550  T
Q  220 tcatacaacccattattagagaaagctagtcc 251  Q
    ||||||||||||||||||||||||| ||||||    
T  6549 tcatacaacccattattagagaaaggtagtcc 6518  T

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Target: scaffold0056 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 18279 - 18329
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttagg 266  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| ||||||    
T  18279 agaattatacaacccattattagagaaagctagtcacacccttaccttagg 18329  T

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Target: scaffold1186 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 2024 - 2073
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| |||||    
T  2024 agaattatacaacccattattagagaaagctagtctcacccttaccttag 2073  T

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Target: scaffold1186; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 1966 - 1998
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  1966 taaccctaatttctataacatcaaaactaacaa 1998  T

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Target: scaffold0594 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 2251 - 2300
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||| |||||    
T  2251 agaattatacaacccattattatagaaagctagtcccacccttaccttag 2300  T

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Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 8848 - 8897
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||| |||||    
T  8848 agaatcatacaatccattattagataaagctagtcccacccttaacttag 8897  T

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Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 14634 - 14585
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| |||||    
T  14634 agaattatacaacccattattagagaaagctagtctcacccttaccttag 14585  T

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Target: scaffold0061; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 23692 - 23643
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| |||||    
T  23692 agaattatacaacccattattagagaaagctagtctcacccttaccttag 23643  T

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Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 68774 - 68725
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||| |||||    
T  68774 agaatcatataacccattattagagaaaggtagtcccacccttaccttag 68725  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 186244 - 186195
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| |||||    
T  186244 agaattatacaacccattattagagaaagctagtctcacccttaccttag 186195  T

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Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 186302 - 186270
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  186302 taaccctaatttctataacatcaaaactaacaa 186270  T

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Target: scaffold0065 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 55982 - 56045
Alignment:
Q  253 acccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttct 317  Q
    ||||||| ||||||||||||||| |||||||  || || |||||||||||| |||||||||||||    
T  55982 acccttaccttaggataatcgattggcagcctctcttc-ttggttcttctcttctcttgttttct 56045  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 499092 - 499159
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttt 314  Q
    |||||| ||||||| ||||||||||||||| |||||||  || || |||||||||||| ||||||||||    
T  499092 tagtcccacccttaccttaggataatcgattggcagcctctcttc-ttggttcttctcttctcttgttt 499159  T

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Target: scaffold0247 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 972 - 1054
Alignment:
Q  104 ttacgttaattcaatgatt-acctactctttcaacaatcaattgtacaaattaaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||| || ||| ||||||| ||| ||||||||||| | | |||||||| ||||||||| |||||||||| ||||||    
T  972 ttacgttaattcgataatttacctactattttaacaatcaattttgc-aattaaccataatttctaaaacatcaaaactaacaa 1054  T

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Target: scaffold0247; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 1080 - 1128
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| |||||| ||||||||||||||||||||||  ||||||| ||||    
T  1080 agaattatacaatccattattagagaaagctagtctcacccttacctta 1128  T

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Target: scaffold0042 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 29422 - 29497
Alignment:
Q  246 tagtcctacccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgttttctccct 321  Q
    |||||| ||||||| |||||| |||||||| |  |||   |||||||||||||||||| ||||||| |||||||||    
T  29422 tagtcccacccttaccttaggttaatcgattgaaagcttctcctctttggttcttctcttctcttggtttctccct 29497  T

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Target: scaffold0328 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 18681 - 18639
Alignment:
Q  223 tacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    |||||| |||||||||||||||||||||| ||||||| |||||    
T  18681 tacaactcattattagagaaagctagtcccacccttaccttag 18639  T

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Target: scaffold0231 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 23649 - 23710
Alignment:
Q  253 acccttatcttaggataatcgatcggcagcccttcctctttggttcttctcctctcttgtttt 315  Q
    ||||||| |||| ||| | |||||||||||| |||||| |||||||||||| |||||||||||    
T  23649 acccttaccttaagattaacgatcggcagcctttcctc-ttggttcttctcttctcttgtttt 23710  T

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Target: scaffold0231; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 17569 - 17520
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| |||||| ||||||||||| ||||||||||| ||||||| |||||    
T  17569 agaattatacaatccattattagaaaaagctagtccgacccttaccttag 17520  T

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Target: scaffold0589 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 4459 - 4492
Alignment:
Q  286 tcctctttggttcttctcctctcttgttttctcc 319  Q
    |||||||||||||||||| |||||||||||||||    
T  4459 tcctctttggttcttctcttctcttgttttctcc 4492  T

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Target: scaffold0108 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 6430 - 6471
Alignment:
Q  224 acaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||||||||||||||||| |||||||| |||||    
T  6430 acaactcattattagagaaagctagtcttacccttaccttag 6471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 35234 - 35185
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatcttag 265  Q
    ||||| ||||||||||||||||| |||||||||| | ||||||| |||||    
T  35234 agaattatacaacccattattagggaaagctagtaccacccttaccttag 35185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 4941 - 4988
Alignment:
Q  216 agaatcatacaacccattattagagaaagctagtcctacccttatctta 264  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||| ||||    
T  4941 agaattatacaacc-attattagagaaagctagtcccacccttacctta 4988  T

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Target: scaffold0369 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 15721 - 15689
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  15721 taaccctaatttctataacatcaaaactaacaa 15689  T

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Target: scaffold0203 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 18046 - 18014
Alignment:
Q  154 taaccctaatttctataacatcaaaattaacaa 186  Q
    |||||||||||||||||||||||||| ||||||    
T  18046 taaccctaatttctataacatcaaaactaacaa 18014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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