View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_low_5 (Length: 477)
Name: NF17468_low_5
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 68 - 345
Target Start/End: Original strand, 51111703 - 51111980
Alignment:
| Q |
68 |
tttctttcttccctatattaccatgcgcatactagaaatgttagtaacaaaattagagtttgaacagtacaaaccagatgcaacgtcttggattttattt |
167 |
Q |
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| T |
51111703 |
tttctttcttccctatattaccatgcgcatactagaaatgttagtaacaaaattagagtttgaacagtacaaaccagatgcaacgtcttggattttattt |
51111802 |
T |
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| Q |
168 |
ttggttttctgagcagtatcagctccatactttgctgtcttctgagtggtgtcattggcatattcagaagcctctttggttttttgagcagcatcacctg |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51111803 |
ttggttttctgagcagtatcagctccatactttgctgtcttctgagtggtgtcattggcatattcagaagcctctttggttttttgagcagcatcacctg |
51111902 |
T |
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| Q |
268 |
catagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttgg |
345 |
Q |
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| T |
51111903 |
catagtctttagatttgtatgctgcatcattggcatactctctagtattgtgagcagcatcacctgcataatctttgg |
51111980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 255 - 464
Target Start/End: Original strand, 51112043 - 51112252
Alignment:
| Q |
255 |
gcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtgtg |
354 |
Q |
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| T |
51112043 |
gcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtatg |
51112142 |
T |
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| Q |
355 |
ctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatctttggt |
454 |
Q |
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| T |
51112143 |
ctgcatctttggtcttctcggcagcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggt |
51112242 |
T |
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| Q |
455 |
cttctctgct |
464 |
Q |
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|||||||||| |
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| T |
51112243 |
cttctctgct |
51112252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 324 - 415
Target Start/End: Original strand, 51112253 - 51112344
Alignment:
| Q |
324 |
gcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc |
415 |
Q |
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| T |
51112253 |
gcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatc |
51112344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 327 - 413
Target Start/End: Original strand, 51111995 - 51112081
Alignment:
| Q |
327 |
tcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgca |
413 |
Q |
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| T |
51111995 |
tcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgctgca |
51112081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 359 - 438
Target Start/End: Original strand, 51112234 - 51112313
Alignment:
| Q |
359 |
atctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcac |
438 |
Q |
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| T |
51112234 |
atctttggtcttctctgctgcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcac |
51112313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 451
Target Start/End: Original strand, 51111989 - 51112065
Alignment:
| Q |
375 |
gcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatcttt |
451 |
Q |
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| T |
51111989 |
gcagcttcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtcttt |
51112065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 51112453 - 51112522
Alignment:
| Q |
239 |
ctctttggttttttgagcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattct |
308 |
Q |
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| T |
51112453 |
ctctttggttttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattct |
51112522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 51111637 - 51111681
Alignment:
| Q |
18 |
ttttatatattttatcataataggaag-aaaagctaacaaaatat |
61 |
Q |
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| T |
51111637 |
ttttatatattttatcataataggaagaaaaagctaacaaaatat |
51111681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 361
Target Start/End: Original strand, 51112304 - 51112410
Alignment:
| Q |
255 |
gcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtgtg |
354 |
Q |
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||||||||||| ||||| ||||||||||||||||||||| || | ||||| ||| | |||| | |||||| |||| ||||| |||||||| || |||| |
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| T |
51112304 |
gcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctcttctgagtagcaccaccagcatagtctttggttttctgtg |
51112403 |
T |
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| Q |
355 |
ctgcatc |
361 |
Q |
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| ||||| |
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| T |
51112404 |
cagcatc |
51112410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 51111875 - 51111936
Alignment:
| Q |
360 |
tctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggc |
421 |
Q |
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| T |
51111875 |
tctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggc |
51111936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 51112165 - 51112257
Alignment:
| Q |
323 |
agcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc |
415 |
Q |
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||||||||| ||||| ||||| ||||||| |||||||||||| | ||||| |||||||||| |||| ||||| ||||| | ||||||||| |
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| T |
51112165 |
agcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtcttctctgctgcatc |
51112257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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