View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_low_6 (Length: 462)
Name: NF17468_low_6
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Complemental strand, 50062256 - 50061825
Alignment:
| Q |
12 |
agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062256 |
agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga |
50062157 |
T |
|
| Q |
112 |
tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaatnnnnnnnnnnnntcaagaaaggccaagctaaatgagctc |
211 |
Q |
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| T |
50062156 |
tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaataaaaagaaaaaatcaagaaaggccaagctaaatgagctc |
50062057 |
T |
|
| Q |
212 |
agattctatcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttagaattcgctataagcttcaaaaggttggatttctttgtaatacta |
311 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50062056 |
agattctttcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttaggattcgctataagcttgaaaaggttggatttctttgtaatacta |
50061957 |
T |
|
| Q |
312 |
atttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttttaggacaattttac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50061956 |
atttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttttaggacaattttac |
50061857 |
T |
|
| Q |
412 |
ccgtttgcttgtattcttgtacgactttgtat |
443 |
Q |
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| T |
50061856 |
ccgtttgcttgtattcttgtacgactttgtat |
50061825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Complemental strand, 44141679 - 44141247
Alignment:
| Q |
12 |
agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141679 |
agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga |
44141580 |
T |
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| Q |
112 |
tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaatnnnnnnnnnnnn-tcaagaaaggccaagctaaatgagct |
210 |
Q |
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| T |
44141579 |
tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaataaaaagaaaaaaatcaagaaaggccaagctaaatgagct |
44141480 |
T |
|
| Q |
211 |
cagattctatcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttagaattcgctataagcttcaaaaggttggatttctttgtaatact |
310 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44141479 |
cagattctttcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttaggattcgctataagcttgaaaaggttggatttctttgtaatact |
44141380 |
T |
|
| Q |
311 |
aatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttttaggacaatttta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44141379 |
aatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttataggacaatttta |
44141280 |
T |
|
| Q |
411 |
cccgtttgcttgtattcttgtacgactttgtat |
443 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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|
| T |
44141279 |
cccgttagcttgtattcttgtacgactttgtat |
44141247 |
T |
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