View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17468_low_8 (Length: 436)
Name: NF17468_low_8
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 3805044 - 3804626
Alignment:
| Q |
18 |
gtatcattatcagaaattgaatgttcatccgtaaaagtgaaaggaacattcaaatctatgttaagaggcatttttaactatggctgaaagttcatacaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3805044 |
gtatcattatcagaaattgaatgttcatgcgtaaaagtgaaagaaacattcaagtctatgttaagaggcatttttaactatggctgaaagttcatacaaa |
3804945 |
T |
|
| Q |
118 |
gctctttttatataaagaatgactggatgtttaaacttcatttctactctattcaaaattt----------------atttgctcaaaattttggtggga |
201 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3804944 |
gctctttttatatagagaatgactagatgtttaaacttcatttctactctattcaaaatttgaaatttcaaaagtttatttgctcaaaattttggtggga |
3804845 |
T |
|
| Q |
202 |
attttctggaaaaaagtggtgggagtttgcctacttttttcaatttgaaatccaaatgagaatatcaatagccacaataaaacctatgtattcttgtgaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3804844 |
attttctggaaaaaagtggtgggagtttgcctacttttttcaatttgaaatccaaatgagaatatcaatagccacaataaaacctatgtattcttgtgaa |
3804745 |
T |
|
| Q |
302 |
gagggagagacgtgtttgtgatgcttgaattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctagaatgtaaggtatgagt |
401 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
3804744 |
gagggagagacgtgtttgtgaggcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctggaatgtaaggtagaagt |
3804645 |
T |
|
| Q |
402 |
agtttggtacaaggatatt |
420 |
Q |
| |
|
||||| || |||||||||| |
|
|
| T |
3804644 |
agtttagtccaaggatatt |
3804626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 5164894 - 5165289
Alignment:
| Q |
18 |
gtatcattatcagaaattgaatgttcatccgtaaaagtgaaaggaacattcaaatctatgttaagaggcatttttaactatggctgaaagttcatacaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5164894 |
gtatcattatcagaaattgaatgttcatgtgtaaaagtgaaaggaacattcaagtctatgttaagaggcatttttaagtatggctgaaagttcatacaaa |
5164993 |
T |
|
| Q |
118 |
gctctttttatataaagaatgactggatgtttaaacttcatttctactctattcaaaa----------------tttatttgctcaaaattttggtggga |
201 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
5164994 |
gctctctttatatagagaatgacgggatgtttaaacttcatttctactctatttaaaatttgaaatttcaaaagtttatttgctcaaaattttggtggga |
5165093 |
T |
|
| Q |
202 |
attttctggaaaaaagtggtgggagtttgcctacttttttcaatttgaaatccaaa-------tgagaatatcaatagccac----------aataaaac |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
5165094 |
attttctggaaaaaagtggtgggagtttgcctacttttttcaatttgaaatccaaatgagctgtgagaatatcaatagccacattaaaccagaataaaac |
5165193 |
T |
|
| Q |
285 |
ctatgtattcttgtgaagagggagagacgtgtttgtgatgcttgaattggaactcatgcaatagctttaatgatagaattacattaattgtaggcag |
381 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5165194 |
tgatgtattcttgtgaaga-ggagaggtgtgtttgtgaggcttgaattgatactcatacaatagctttaatgatagaattacattaattgtaggcag |
5165289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 8435037 - 8435255
Alignment:
| Q |
48 |
gtaaaagtgaaaggaacattcaaatctatgttaagaggcatttttaactatggctgaaagttcatacaaagctctttttatataaagaatgactggatgt |
147 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | | ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
8435037 |
gtaaaagtgaaaggaacattcaagtctatgttaagggacgtttttaagtatggctgaaagttcatacaaagctctctttatatagagaatgactggatgt |
8435136 |
T |
|
| Q |
148 |
ttaaacttcatttctactctattc----------------aaaatttatttgctcaaaattttggtgggaattttctggaaaaaagtggtgggagtttgc |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
8435137 |
ttaaacttcatttctactctattcaaaatttgaaatttcaaaaatttatttgctcaaaattttggtgggaattttatgaaaaaaagtggtgggagtttgc |
8435236 |
T |
|
| Q |
232 |
ctacttttttcaatttgaa |
250 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8435237 |
ctacttttttcaatttgaa |
8435255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 287 - 420
Target Start/End: Original strand, 27149785 - 27149918
Alignment:
| Q |
287 |
atgtattcttgtgaagagggagagacgtgtttgtgatgcttgaattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctaga |
386 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27149785 |
atgtattcttgtgaagagggagaggcgtgtttgtgaggcttgaattggtactcatacaatagctttaatgatagaattacattaattgtaggcagctgta |
27149884 |
T |
|
| Q |
387 |
atgtaaggtatgagtagtttggtacaaggatatt |
420 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||| |
|
|
| T |
27149885 |
atgtaaggtaggagtagtttagtccaaggatatt |
27149918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 287 - 420
Target Start/End: Original strand, 8435257 - 8435390
Alignment:
| Q |
287 |
atgtattcttgtgaagagggagagacgtgtttgtgatgcttgaattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctaga |
386 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8435257 |
atgtattcttgtgaagagggagaagcatgtttgtgaggcttgaattggtactcatacaatagctttaatgatagaattacattaattgtaggcagctgta |
8435356 |
T |
|
| Q |
387 |
atgtaaggtatgagtagtttggtacaaggatatt |
420 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||| |
|
|
| T |
8435357 |
atgtaaggtaggagtagtttagtccaaggatatt |
8435390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 31742375 - 31742769
Alignment:
| Q |
18 |
gtatcattatcagaaattgaatgttcatccgtaaaagtgaaaggaacattcaaatctatgttaagaggcatttttaactatggctgaaagttcatacaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31742375 |
gtatcattatcagaaattgaatgttcatgtgtaaaagtgaaaggaacattcaagtctatgttaagaggcatttttaagtatggctgaaagttcatacaaa |
31742474 |
T |
|
| Q |
118 |
gctctttttatataaagaatgactggatgtttaaacttcatttctactctattcaaaa----------------tttatttgctcaaaattttggtggga |
201 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | | |
|
|
| T |
31742475 |
gctctctttatatagagaatgactggatggttaaacttcatttctactctattcaaaatttgaaatttcaaaagtttatttgctcaaaattttggtcgaa |
31742574 |
T |
|
| Q |
202 |
attttctggaaaaaagtggtgggagtttgcctacttttttcaatttgaaatccaaa-------tgagaatatcaatagccac----------aataaaac |
284 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
31742575 |
attttttggaaaaaagtggtgggagtttgcctacttttttcaatttgaaatccaaatgagctgtgagaatatcaatagccacattaaaccataataaaac |
31742674 |
T |
|
| Q |
285 |
ctatgtattcttgtgaagagggagagacgtgtttgtgatgcttgaattggaactcatgcaatagctttaatgatagaattacattaattgtaggc |
379 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31742675 |
cgatgtattcttgtgaagagggagaggcgtgtttgtgaggcttgaattggtactcatacaatagctttaatgatagaattacattaattgtaggc |
31742769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University