View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_low_9 (Length: 432)
Name: NF17468_low_9
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 34825090 - 34824762
Alignment:
| Q |
7 |
aaaatgatatttgtttaagttgcagctatcagccggatccagggtcagtctgtacggcaggaccaagcatgagtaattacatgggaggatggttaccata |
106 |
Q |
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| T |
34825090 |
aaaatgatatttgtttaagttgcagctatcagccggatccagggtcagtctgtacggcaggaccaagcatgagtaattacatgggaggatggttaccata |
34824991 |
T |
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| Q |
107 |
gtgaagctcatgtttcgttttctgcataagttccactccaccatcaagtttgtggttccaattttatttgaaaatggctagaaaaattaatttcctttga |
206 |
Q |
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| T |
34824990 |
gcgacgctcatgtttcgttttcagcataagttccactccaccaacaagtttgtggttccaattttatttgaaaatggctagaaaaattaatttcctttga |
34824891 |
T |
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| Q |
207 |
catgtaatggactgactagtaagtttctactatgtaggaacaatgtaagcagttctgttctatgtgtgctttttgtaaaactgcacttctttcctttatc |
306 |
Q |
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| T |
34824890 |
catgtaatggactgactagtaagtttctactatgtaggaacaatgtaagcagttctgttctatgtgtgctttttgtaaaactgcacttctttcctttatc |
34824791 |
T |
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| Q |
307 |
actgatttcctccctttcagattgtagat |
335 |
Q |
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| T |
34824790 |
actgatttcttccctttcagattgtagat |
34824762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 34824730 - 34824682
Alignment:
| Q |
367 |
ttgtttgcatgtacttgtttcctgaattattattattctgagacattag |
415 |
Q |
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| T |
34824730 |
ttgtttgcatctacttgtttcctgaattattattattctgagacattag |
34824682 |
T |
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