View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17469_high_10 (Length: 394)

Name: NF17469_high_10
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17469_high_10
NF17469_high_10
[»] chr1 (1 HSPs)
chr1 (9-380)||(562483-562853)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 562853 - 562483
Alignment:
Q  9 caaaaatatcgtaattaaattgtttttgaggtaaagctatatgaaagcagataaaatatgattatattttcatctcctaaatgcatttaacaaatattat 108  Q
    |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  562853 caaaaaaatcgttattaaattatttttgaggtaaagctatatgaaagcagataaaatatgattattttttcatctccttaatgcatttaacaaacattat 562754  T
Q  109 ataagaatgtgtatgacgtttttagcttaaatatatgaccggaaagaatatcatattcgcttctaattatatggttgagctaagaacatgatccatatcc 208  Q
    |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||  |||||||||||    
T  562753 ataagaatgtgtataacatttttagcttaaatatatgatcggaaagaatatcatattcgcttataattatatgtttgagctaagaacgcgatccatatcc 562654  T
Q  209 ttacataaataaatttaatttgtgaaatgcatttaagtaatgaaaaaacaattttagacattctttaatttgtaaaactcactacgttagataatcaaga 308  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  562653 ttacataaaaaaatttaatttgtgaaatgcatttaagtaatgaaaaaacaattttagacattctttaatttgtaaaactcactacgatagataatcaaga 562554  T
Q  309 gtcatggagattgggagaccaactaatttgagttaagaaataaaagagatggagatccgtcgagttctaatt 380  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  562553 gtcatggagattgggagaccaactaatttgagttaagaaat-aaagagatggagatccgtcgaattctaatt 562483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University