View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_high_16 (Length: 314)
Name: NF17469_high_16
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 8926340 - 8926206
Alignment:
| Q |
171 |
tatatatgcatgtttagaatcagagtgaacttaacgaggtgacacgacacatcgtgattctgtcaagttcaccgttaatctaaacatgcac--------a |
262 |
Q |
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| T |
8926340 |
tatatatgcatgtttagaatcaaagtgaacttaacgaggtgacacgacacatcgtgattctgtcaagttcaccgttaatctaaacatgcactgtattaaa |
8926241 |
T |
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| Q |
263 |
gagaaattttgatgatgtatagaactagcacctca |
297 |
Q |
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| T |
8926240 |
gagaaattttgatgatgtatagaactagtacctca |
8926206 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 8926476 - 8926393
Alignment:
| Q |
31 |
ttccatacactgcttgtagtgttcttttgtgagcttctccactttgtccatcaactcaatagatatactatggttcacacactt |
114 |
Q |
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| T |
8926476 |
ttccatacacttcttgtagtgttcttttgtgagcttctccactttgtccatcaactcaatagatatactatggttcacacactt |
8926393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 55523222 - 55523146
Alignment:
| Q |
32 |
tccatacactgcttgtagtgttcttttgtgagcttctccactttgtccatcaactcaatagatatactatggttcac |
108 |
Q |
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| T |
55523222 |
tccatacgcttcttgtagttttcttttgtcagcttctcaactttgtccatgaactctatggatatcccatggttcac |
55523146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15502743 - 15502777
Alignment:
| Q |
1 |
tatgaatcaatagaaagaaatgcgcaaagattcca |
35 |
Q |
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| T |
15502743 |
tatgaatcaatagaaagaaatgctcaaagattcca |
15502777 |
T |
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