View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_high_4 (Length: 504)
Name: NF17469_high_4
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 37546919 - 37547389
Alignment:
| Q |
16 |
atgttcacagcgggccttggagttgagtaggatgaatggtttcggctaactcaagatttagggaaataactcagtgttccctgtttatatgaggggggaa |
115 |
Q |
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| T |
37546919 |
atgttcacagcgggcctcggagttgagtaggatgaatggtttcggctaactcaagatttagggaaataactcagtgttccctgtttatatgaggggggaa |
37547018 |
T |
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| Q |
116 |
aaggagttatatgatcatttgttggaaaacactcaacatcgccttagtaactggcatgcatgtgcactttcttttgtcggtggagttacaatggctcaat |
215 |
Q |
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| T |
37547019 |
aaggagttatatgatcatttgttggaaaacactcaacatcgccttagtaactggcatgcatgtgcactttcttttgtcggtggagttgcaatggctcaat |
37547118 |
T |
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| Q |
216 |
aagtggtggtttctcttcttacgtacactatgcaaacaattattctcccaatgcacgtttgtagttagctagaaaaaatgaaaagtgattttgtgcggat |
315 |
Q |
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| T |
37547119 |
aagtggtggtttctcttcttacgtacactatgcaaacaattattctcccaatgcacgtttgtagttagctagaaaaaatgaaaagtga-tttgtgcggat |
37547217 |
T |
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| Q |
316 |
gggcgcagaaactacataatatctattggaacaacttcatccaacctaagttgatagggttaagggatcacaactttaataaatatttcatcaagaagtt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37547218 |
gggcgcagaaactacataatatctattggaacaacttcatccaacctaagttgatagggttaagggatcacaactttaataaatatttcatcaagaagtt |
37547317 |
T |
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| Q |
416 |
gggatggggagtggggggactaagcctaatgttctttaggtccaggtctttcctaagtaagtatgaggtttg |
487 |
Q |
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| T |
37547318 |
gggatggggagtggggggactaagcctaatgttctttaggtccaggtctttcctaagtaagtatgaggtttg |
37547389 |
T |
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