View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17469_high_8 (Length: 405)

Name: NF17469_high_8
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17469_high_8
NF17469_high_8
[»] chr5 (8 HSPs)
chr5 (13-405)||(20812416-20812808)
chr5 (14-405)||(20838771-20839162)
chr5 (177-405)||(12598886-12599114)
chr5 (347-405)||(15803050-15803108)
chr5 (335-401)||(30417963-30418029)
chr5 (345-403)||(8877750-8877808)
chr5 (12-94)||(12598803-12598885)
chr5 (145-201)||(15803260-15803316)
[»] chr8 (19 HSPs)
chr8 (13-405)||(31175986-31176378)
chr8 (13-405)||(3398190-3398582)
chr8 (112-405)||(3324769-3325062)
chr8 (335-404)||(3314998-3315067)
chr8 (345-405)||(3407325-3407385)
chr8 (336-405)||(3391529-3391598)
chr8 (334-405)||(7164643-7164714)
chr8 (336-398)||(3262620-3262682)
chr8 (335-405)||(3364308-3364378)
chr8 (345-405)||(3286517-3286577)
chr8 (12-181)||(3375712-3375880)
chr8 (126-218)||(3262410-3262502)
chr8 (14-96)||(3407006-3407088)
chr8 (12-98)||(7164327-7164413)
chr8 (132-218)||(3267041-3267127)
chr8 (145-201)||(3391332-3391388)
chr8 (13-97)||(3429652-3429740)
chr8 (254-351)||(3375261-3375358)
chr8 (345-405)||(3267200-3267260)
[»] chr6 (17 HSPs)
chr6 (128-396)||(31059594-31059863)
chr6 (345-403)||(5354496-5354554)
chr6 (345-403)||(5157510-5157568)
chr6 (345-398)||(5370717-5370770)
chr6 (345-402)||(5690041-5690098)
chr6 (345-403)||(5066576-5066634)
chr6 (345-403)||(5176880-5176938)
chr6 (345-403)||(5243795-5243853)
chr6 (345-403)||(5278707-5278765)
chr6 (345-403)||(5345002-5345060)
chr6 (345-403)||(5426051-5426109)
chr6 (345-402)||(5096850-5096907)
chr6 (345-402)||(5128299-5128356)
chr6 (348-403)||(5073793-5073848)
chr6 (345-403)||(5102496-5102554)
chr6 (348-405)||(5181812-5181869)
chr6 (345-405)||(5397089-5397149)
[»] chr3 (8 HSPs)
chr3 (345-405)||(6905808-6905868)
chr3 (345-403)||(47986754-47986812)
chr3 (345-403)||(47996041-47996099)
chr3 (345-403)||(48005328-48005386)
chr3 (345-403)||(48014613-48014671)
chr3 (336-405)||(32411076-32411145)
chr3 (13-93)||(6905497-6905577)
chr3 (14-218)||(32410763-32410964)
[»] scaffold0468 (1 HSPs)
scaffold0468 (336-405)||(6139-6208)
[»] chr4 (14 HSPs)
chr4 (345-405)||(4344785-4344845)
chr4 (346-405)||(4320502-4320561)
chr4 (345-405)||(4361216-4361276)
chr4 (347-399)||(6498410-6498462)
chr4 (345-405)||(4123821-4123881)
chr4 (347-401)||(6545332-6545386)
chr4 (351-401)||(6588084-6588134)
chr4 (347-401)||(6675846-6675900)
chr4 (354-401)||(6753103-6753150)
chr4 (353-403)||(4335486-4335536)
chr4 (347-401)||(6532116-6532170)
chr4 (347-401)||(6651210-6651264)
chr4 (351-401)||(6728549-6728599)
chr4 (351-401)||(6837417-6837467)
[»] chr7 (3 HSPs)
chr7 (345-403)||(36213711-36213769)
chr7 (122-178)||(8371420-8371476)
chr7 (336-403)||(8371652-8371719)
[»] chr2 (1 HSPs)
chr2 (13-208)||(14766611-14766803)
[»] scaffold0813 (1 HSPs)
scaffold0813 (347-401)||(4710-4764)
[»] scaffold0373 (1 HSPs)
scaffold0373 (351-401)||(9833-9883)
[»] scaffold0294 (1 HSPs)
scaffold0294 (345-402)||(8782-8839)


Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 20812808 - 20812416
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |    
T  20812808 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtaatttcaaggaaagattttcgatttggtgtgc 20812709  T
Q  113 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20812708 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaatatatcttcttaattcttgagtaagttgattctctgagtggcattgaaac 20812609  T
Q  213 caaacacatcgaagctttgaaaggacggtaagcatcggtgattgatagtccatattattactctctacatccaaagaaactagagacaatgaatttcctg 312  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20812608 caaacacatcgaagctttgataggacggtaagcatcggtgattgatattccatattattactctctacatccaaagaaactagagacaatgaatttcctg 20812509  T
Q  313 caaatggaaaaatatgggactgggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20812508 caaatggaaaaatatgggactgggaatttctggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcgtatc 20812416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 20839162 - 20838771
Alignment:
Q  14 aacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20839162 aacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaagaaaagatttttgatttggtgtcca 20839063  T
Q  114 tgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaacc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20839062 tgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaacc 20838963  T
Q  214 aaacacatcgaagctttgaaaggacggtaagcatcggtgattgatagtccatattattactctctacatccaaagaaactagagacaatgaatttcctgc 313  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20838962 aaacacatcgaagctttgataggacggtaaccatcggtgattgatagtccatattattactctctacatccaaagaaactagagacaatgaattgcctgc 20838863  T
Q  314 aaatggaaaaatatgggactgggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20838862 aaatggaaaaacatgggacagggaatttctggttggtgacatccaagaccaaatgagagaaggaaaaacatcatgtgataatccttcatatc 20838771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 177 - 405
Target Start/End: Original strand, 12598886 - 12599114
Alignment:
Q  177 tcttgagtaagttgattctctgagtggcattgaaaccaaacacatcgaagctttgaaaggacggtaagcatcggtgattgatagtccatattattactct 276  Q
    ||||||||  ||||| |||||||||||||||||| |||||||| || ||| ||||| ||    ||||| |  | |||| ||||| |||||||||||||||    
T  12598886 tcttgagttggttgaatctctgagtggcattgaacccaaacacttctaagttttgagagacttgtaagtactgatgatcgatagcccatattattactct 12598985  T
Q  277 ctacatccaaagaaactagagacaatgaatttcctgcaaatggaaaaatatgggactgggaatttatggttggtgacatccaagaccaaatgagagaagg 376  Q
     | ||||||| || |||| |||||||||  | ||| |||||||| ||||||||    ||||||||| |||||||||||||||||||||| ||||||||||    
T  12598986 ttgcatccaaggacactaaagacaatgacatgcctccaaatggagaaatatggtgtagggaatttacggttggtgacatccaagaccaattgagagaagg 12599085  T
Q  377 aaaaacatcacgtgataatccttcatatc 405  Q
    |||||||||||||||||||||||||||||    
T  12599086 aaaaacatcacgtgataatccttcatatc 12599114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 347 - 405
Target Start/End: Complemental strand, 15803108 - 15803050
Alignment:
Q  347 tggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    |||||| |||||||||| |||||||||||||||||||||| |||||||||||| |||||    
T  15803108 tggtgatatccaagacctaatgagagaaggaaaaacatcatgtgataatcctttatatc 15803050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 401
Target Start/End: Complemental strand, 30418029 - 30417963
Alignment:
Q  335 ggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    ||||||||| |||||||||||||||||||  |||||| ||||||||||||||||||  |||||||||    
T  30418029 ggaatttattgttggtgacatccaagaccgtatgagacaaggaaaaacatcacgtgcaaatccttca 30417963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 8877808 - 8877750
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||| || |||||||||||    
T  8877808 gttggtgacatccaagaccaaatgatagatggaaacacatcacgcgaaaatccttcata 8877750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 12598803 - 12598885
Alignment:
Q  12 agaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaag 94  Q
    |||||||||| || | ||||||||||||| ||  |||| | |||| |||| ||||||||||||| ||||||| |||| |||||    
T  12598803 agaacctgtgatatgttcttgccaagagtgtcgatgacaagttggaaactccccattccaatcaaaagtgatctcaaagaaag 12598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 15803316 - 15803260
Alignment:
Q  145 catcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagt 201  Q
    |||||||||||| ||||| ||||||||| ||||||||  | |||||| |||||||||    
T  15803316 catcatatagattatcaagaaatcttctgaattcttgtttcagttgaatctctgagt 15803260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 31176378 - 31175986
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcc 112  Q
    |||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||||||||||    
T  31176378 gaacctgtgctaagctcttgtcaagagtatccaagactatttgggaacttcccattccaatcccaattgatttcaaggaaatatttgtgatttggtgtcc 31176279  T
Q  113 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaac 212  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  31176278 atatgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtgacattgaacc 31176179  T
Q  213 caaacacatcgaagctttgaaaggacggtaagcatcggtgattgatagtccatattattactctctacatccaaagaaactagagacaatgaatttcctg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31176178 caaacacatcgaagctttgaaaggacggtaagcatcggtgattgatagtccatattattactctctacatccaaagaaactagagacaatgaattgcctg 31176079  T
Q  313 caaatggaaaaatatgggactgggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    |||| |||  |||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  31176078 caaacggatgaataagggatagggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacgtcacatgataatccttcatatc 31175986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 3398190 - 3398582
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcc 112  Q
    |||||||||||||||||||  ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  3398190 gaacctgtgctaagctcttatcaagagtatccatgactatttgggaacttcccattccaatcacaattgatttcaaggaaagatttgtgatttggtgtcc 3398289  T
Q  113 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3398290 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgactggcattgaaac 3398389  T
Q  213 caaacacatcgaagctttgaaaggacggtaagcatcggtgattgatagtccatattattactctctacatccaaagaaactagagacaatgaatttcctg 312  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||  ||| ||| |||||||||||||||||||| ||||    
T  3398390 caaacacatcgaagctttgaaaggacggtaagcattggtgattgatagtccatattattactttccgcatgcaaggaaactagagacaatgaattgcctg 3398489  T
Q  313 caaatggaaaaatatgggactgggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    |||| ||| ||||| ||||  |||||||| |||||||||||||||| |||||||||||||||||||||||||||   |||||||||| |||||    
T  3398490 caaacggagaaatacgggatagggaatttctggttggtgacatccatgaccaaatgagagaaggaaaaacatcagacgataatcctttatatc 3398582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 112 - 405
Target Start/End: Original strand, 3324769 - 3325062
Alignment:
Q  112 catgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaa 211  Q
    |||||||| ||||||| ||||  |||||| | ||||||||||||||||||| |||  |||||||||||||||| |||||| |||||||  |||||||||     
T  3324769 catgtgatattgtttcgaacttggtaaaacttacatcatatagatcatcaaaaaagtttcttaattcttgagtcagttgaatctctgatcggcattgaat 3324868  T
Q  212 ccaaacacatcgaagctttgaaaggacggtaagcatcggtgattgatagtccatattattactctctacatccaaagaaactagagacaatgaatttcct 311  Q
    |||||||| || | | ||||||||   || |||||| |||||||||||| ||||||| ||| |   || |||||| |||||| | |||||||||||||      
T  3324869 ccaaacacttctatgttttgaaagattgggaagcattggtgattgatagcccatattgttagtagttaaatccaaggaaactggtgacaatgaatttcgc 3324968  T
Q  312 gcaaatggaaaaatatgggactgggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
     |||||||  | |||  ||   ||||||| ||| |||||||||||||||||||||||| |||||||||||||||  |||||| |||||||||||    
T  3324969 tcaaatggggatatacagggtagggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgatagtccttcatatc 3325062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 335 - 404
Target Start/End: Complemental strand, 3315067 - 3314998
Alignment:
Q  335 ggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatat 404  Q
    |||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  3315067 ggaattcatgtttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataaaccttcatat 3314998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 3407325 - 3407385
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  3407325 gttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataatccttgatatc 3407385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 3391529 - 3391598
Alignment:
Q  336 gaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  3391529 gaattcattgttggtgacatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatc 3391598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 7164643 - 7164714
Alignment:
Q  334 gggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||||| | |||||||||||||||||||||||| |||||||||||||||||||  ||||| ||||||||||    
T  7164643 gggaattcaaggttggtgacatccaagaccaaataagagaaggaaaaacatcacaggataacccttcatatc 7164714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 3262620 - 3262682
Alignment:
Q  336 gaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatcct 398  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  3262620 gaattcatggttggtgacatccaagaccaaatgatagagggaaaaacatcacgtgaaaatcct 3262682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 3364378 - 3364308
Alignment:
Q  335 ggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    |||||| || |||||||| |||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  3364378 ggaattcattgttggtgatatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatc 3364308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 3286517 - 3286577
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||||||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||    
T  3286517 gttggtgacatccaagacctaatgagagattgaaaaacatcatgtgataatccttcatatc 3286577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 3375880 - 3375712
Alignment:
Q  12 agaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtc 111  Q
    |||||||||| || | ||||| ||||||| ||  |||| | |||| |||| || |||||||||| ||||||| |||| |||||| ||   ||| |  |||    
T  3375880 agaacctgtgatatgttcttgacaagagtgtca-tgacaagttggaaactccctattccaatcaaaagtgatctcaaagaaagacttgacattcgtggtc 3375782  T
Q  112 catgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttg 181  Q
     ||| |||||||||| |||||| ||||| || |||||||| |||||||||| |||| |||||||||||||    
T  3375781 tatgcgatgttgttttcaactcggtaaagtttacatcatacagatcatcaacaaattttcttaattcttg 3375712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 3262410 - 3262502
Alignment:
Q  126 tccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaaccaaaca 218  Q
    ||||| ||||||||||| |||||| || ||||||||| || ||||| ||||||| |||| |||||| ||| |||| ||||||| |||||||||    
T  3262410 tccaattcagtaaaatttacatcacattgatcatcaagaattcttcgtaattctcgagttagttgaatctttgagcggcattgtaaccaaaca 3262502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 3407006 - 3407088
Alignment:
Q  14 aacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagat 96  Q
    |||||| | |||||||||||||||||| ||  ||||| | ||| |||||||||||||||||| ||| |||| |||||||||||    
T  3407006 aacctgcgataagctcttgccaagagtctcgttgactttgtggtaacttcccattccaatcaaaagagattgcaaggaaagat 3407088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 7164327 - 7164413
Alignment:
Q  12 agaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagattt 98  Q
    |||||||| | || |||||||||| |||||||  ||| ||| ||  |||||||||||||||||| ||||||| ||||||||||||||    
T  7164327 agaacctgggatatgctcttgccacgagtatcaatgattatgtgacaacttcccattccaatcaaaagtgatctcaaggaaagattt 7164413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 3267041 - 3267127
Alignment:
Q  132 tcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaaccaaaca 218  Q
    |||||| |||| | || |||| ||||||||| || | || ||||||||||||| |||||||||| |||||||||||| | |||||||    
T  3267041 tcagtacaattaatataatattgatcatcaaaaattatttttaattcttgagttagttgattctttgagtggcattgtatccaaaca 3267127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 3391332 - 3391388
Alignment:
Q  145 catcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagt 201  Q
    |||||||||||||||||| ||||||||| ||||||||  | |||||| |||||||||    
T  3391332 catcatatagatcatcaagaaatcttctgaattcttgtttcagttgaatctctgagt 3391388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 3429740 - 3429652
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactattt----gggaacttcccattccaatcacaagtgatttcaaggaaagatt 97  Q
    ||||||||| ||| |||||||||||||||||  ||||||| |    || |||||||||||||||||| ||| ||| ||||| |||||||    
T  3429740 gaacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcataagagatctcaagaaaagatt 3429652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 351
Target Start/End: Complemental strand, 3375358 - 3375261
Alignment:
Q  254 ttgatagtccatattattactctctacatccaaagaaactagagacaatgaatttcctgcaaatggaaaaatatgggactgggaatttatggttggtg 351  Q
    ||||||| ||||| ||||||||||| ||||||| ||  ||| |||||||||  | ||| |||||||| ||||| ||  | ||||||||| ||||||||    
T  3375358 ttgatagcccatagtattactctctgcatccaaggacgctaaagacaatgacatgcctccaaatggagaaatagggtgcagggaatttacggttggtg 3375261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 3267200 - 3267260
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||||||||||||||||  ||| | |||| ||||||||||   |||||||||||||||||    
T  3267200 gttggtgacatccaagactgaataatagaatgaaaaacatcttctgataatccttcatatc 3267260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 128 - 396
Target Start/End: Original strand, 31059594 - 31059863
Alignment:
Q  128 caactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaaccaaacacatcgaagc 227  Q
    |||||||||||||||||  |||||||| ||||||| ||||||||||||||||||||| |||||| |||||||||||||||| | |||| ||  || |       
T  31059594 caactcagtaaaattcaattcatataggtcatcaagaaatcttcttaattcttgagttagttgaatctctgagtggcattg-acccaagcaattctatat 31059692  T
Q  228 tttgaaaggacggtaagcatcggtgattgatagtccatattattactctcta---catccaaagaaactagagacaatgaatttcctgcaaatggaaaaa 324  Q
    |||||||||| | ||||| | |||||| ||||   |||||||||||||||||   ||||||| ||||||| | | |||||||   || |||||||| |||    
T  31059693 tttgaaaggatgataagcgttggtgatagatacctcatattattactctctactgcatccaaggaaactaaatagaatgaatcgactccaaatggagaaa 31059792  T
Q  325 tatgggactgggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatc 396  Q
    || | | | ||||||||||  ||||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  31059793 tacgaggc-gggaatttataattggtgacatcaaagaccaaatgagagaaggaaaaacatcacatgacaatc 31059863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 5354496 - 5354554
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||    
T  5354496 gttggtgacatccaagaccaaatgatagatggaaacacatcacgtgagaatccttcata 5354554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 5157510 - 5157568
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||| || |||||||||||    
T  5157510 gttggtgacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcata 5157568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 5370770 - 5370717
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatcct 398  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||| ||||||    
T  5370770 gttggtgacatccaagaccaaatgatagatggaaaaacatcatgtgaaaatcct 5370717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 5690041 - 5690098
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcat 402  Q
    ||||||||||||||||||||||||| ||| ||||| | ||||||||| ||||||||||    
T  5690041 gttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcat 5690098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 5066576 - 5066634
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    |||||||||||||||||| |||||| ||| ||||| |||||||| || |||||||||||    
T  5066576 gttggtgacatccaagacaaaatgatagatggaaacacatcacgcgagaatccttcata 5066634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 5176938 - 5176880
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    |||||||||||||||||||||||||  || ||||| | ||||||||| |||||||||||    
T  5176938 gttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcata 5176880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 5243795 - 5243853
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    |||||||||||||||||||| |||| ||| ||||| ||||| ||||| |||||||||||    
T  5243795 gttggtgacatccaagaccagatgatagatggaaatacatcgcgtgaaaatccttcata 5243853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 5278765 - 5278707
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    |||||||||||||||||||||||||  || ||||| | ||||||||| |||||||||||    
T  5278765 gttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcata 5278707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 5345060 - 5345002
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    |||||||||||||||||||| |||| ||| ||||| ||||| ||||| |||||||||||    
T  5345060 gttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcata 5345002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 5426109 - 5426051
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    |||||||||||||||||||||||||  |  ||||| ||||||||||| |||||||||||    
T  5426109 gttggtgacatccaagaccaaatgatcgctggaaacacatcacgtgaaaatccttcata 5426051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 5096907 - 5096850
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcat 402  Q
    |||||||||| ||||||||| |||| ||| ||||| ||||||||||| ||||||||||    
T  5096907 gttggtgacaaccaagaccagatgatagacggaaacacatcacgtgaaaatccttcat 5096850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 5128299 - 5128356
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcat 402  Q
    |||||||||||||||||||| |||| ||| ||||| ||||||| ||| ||||||||||    
T  5128299 gttggtgacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcat 5128356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 5073793 - 5073848
Alignment:
Q  348 ggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    ||||||||||||||||||||||  || || || ||||||||||| |||||||||||    
T  5073793 ggtgacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcata 5073848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 5102496 - 5102554
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    |||||||||||||||||||| |||| ||| ||||| |||||| |||| | |||||||||    
T  5102496 gttggtgacatccaagaccagatgatagatggaaacacatcatgtgaaagtccttcata 5102554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 5181812 - 5181869
Alignment:
Q  348 ggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||||||||||||||||||||  |  ||||| |||||| |||| |||||||||||||    
T  5181812 ggtgacatccaagaccaaatgatcgctggaaacacatcatgtgagaatccttcatatc 5181869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 5397149 - 5397089
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    |||||||||||||||||| |||||| ||  ||||| || |||| ||| |||||||||||||    
T  5397149 gttggtgacatccaagacgaaatgatagctggaaacacttcacatgaaaatccttcatatc 5397089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 6905808 - 6905868
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6905808 gttggtgacatccaagaccaaatgagagaaggaaaaatatcacgtgataatccttcatatc 6905868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 47986754 - 47986812
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||    
T  47986754 gttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47986812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 47996041 - 47996099
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||    
T  47996041 gttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47996099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 48005328 - 48005386
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||    
T  48005328 gttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48005386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 48014613 - 48014671
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||    
T  48014613 gttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48014671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 32411076 - 32411145
Alignment:
Q  336 gaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||| || |||||||||||| |||||||||||||||| ||||| || ||| ||||||||||||||||||    
T  32411076 gaattcattgttggtgacatctaagaccaaatgagagagggaaatacttcatgtgataatccttcatatc 32411145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 6905497 - 6905577
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaa 93  Q
    ||||||||| |||||||||||||||||||||   |||||| ||| |||||||||||  ||||| ||| |||||||||||||    
T  6905497 gaacctgtgataagctcttgccaagagtatcgacgactatgtggcaacttcccattgtaatcaaaagagatttcaaggaaa 6905577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 32410763 - 32410964
Alignment:
Q  14 aacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcca 113  Q
    |||||||| || ||||||||||||||||||  | ||||| ||| |||||||||||| ||||| ||| ||  |||| ||| |||||  || |||   | ||    
T  32410763 aacctgtgatatgctcttgccaagagtatcaataactatgtggcaacttcccattctaatcaaaagcgacctcaaagaatgatttgagaattgtgatgca 32410862  T
Q  114 tgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaacc 213  Q
    ||||| |||   |||||||  ||||| ||| |||||||| || || ||| || ||||| |||||||||||| |||||| ||| |||| ||||||| | ||    
T  32410863 tgtgacgtt---tccaacttggtaaagttcgcatcatattgaccaccaagaattcttcgtaattcttgagttagttgaatctttgagcggcattgtaccc 32410959  T
Q  214 aaaca 218  Q
    |||||    
T  32410960 aaaca 32410964  T

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Target: scaffold0468 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 6139 - 6208
Alignment:
Q  336 gaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  6139 gaattcattgttggtgacatccaagaccaaataagggaaggaaaaacatcacgtgataatccttcatatc 6208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 4344845 - 4344785
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  4344845 gttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatc 4344785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 4320502 - 4320561
Alignment:
Q  346 ttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  4320502 ttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatc 4320561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 4361276 - 4361216
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||||| |||||||||||||    
T  4361276 gttggtgacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatc 4361216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 6498410 - 6498462
Alignment:
Q  347 tggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatcctt 399  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  6498410 tggtgacatccaagaccgaatgagagaaggaaatacatcacgtgaaaatcctt 6498462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 4123821 - 4123881
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcatatc 405  Q
    |||||| ||||||||||| |||||| ||||||||| |||||||| || |||||||||||||    
T  4123821 gttggtaacatccaagacgaaatgatagaaggaaacacatcacgagagaatccttcatatc 4123881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 6545332 - 6545386
Alignment:
Q  347 tggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    |||||||| |||||||| |||||||||||| || ||||||||||| |||||||||    
T  6545332 tggtgacagccaagaccgaatgagagaagggaatacatcacgtgaaaatccttca 6545386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 6588084 - 6588134
Alignment:
Q  351 gacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    ||||||||||||| |||||||||||| || ||||||||||| |||||||||    
T  6588084 gacatccaagaccgaatgagagaagggaatacatcacgtgaaaatccttca 6588134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 6675900 - 6675846
Alignment:
Q  347 tggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    ||||||||||||||||  ||||||||||||||| |||||| |||| |||||||||    
T  6675900 tggtgacatccaagacttaatgagagaaggaaatacatcaagtgaaaatccttca 6675846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 6753150 - 6753103
Alignment:
Q  354 atccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    |||||||||| |||||||||||| || ||||||||||| |||||||||    
T  6753150 atccaagaccgaatgagagaagggaatacatcacgtgaaaatccttca 6753103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 403
Target Start/End: Complemental strand, 4335536 - 4335486
Alignment:
Q  353 catccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    ||||||||||||||| | ||||||||| |||||||| || |||||||||||    
T  4335536 catccaagaccaaattatagaaggaaacacatcacgggagaatccttcata 4335486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 6532116 - 6532170
Alignment:
Q  347 tggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    ||||||||||||||||| ||||| ||||||||| ||||||  ||| |||||||||    
T  6532116 tggtgacatccaagaccgaatgatagaaggaaatacatcatttgaaaatccttca 6532170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 6651264 - 6651210
Alignment:
Q  347 tggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    ||||||||||||||||| || |||| ||||||| ||||| ||||| |||||||||    
T  6651264 tggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttca 6651210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 6728599 - 6728549
Alignment:
Q  351 gacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    ||||||||||||||||  |||||||| || ||||||||||| |||||||||    
T  6728599 gacatccaagaccaaacaagagaagggaatacatcacgtgaaaatccttca 6728549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 6837467 - 6837417
Alignment:
Q  351 gacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    ||||||||||| | |||||||||||| || ||||||||||| |||||||||    
T  6837467 gacatccaagagcgaatgagagaagggaatacatcacgtgaaaatccttca 6837417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 36213711 - 36213769
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    ||||||||||||||||||||||||| ||| ||||| |||||| |||| |||||||||||    
T  36213711 gttggtgacatccaagaccaaatgatagatggaaacacatcatgtgagaatccttcata 36213769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 8371420 - 8371476
Alignment:
Q  122 tgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattc 178  Q
    ||||||||  |||||||||||  |||||||||||||||||| |||||||||||||||    
T  8371420 tgtttccagttcagtaaaatttgcatcatatagatcatcaagaaatcttcttaattc 8371476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 8371652 - 8371719
Alignment:
Q  336 gaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcata 403  Q
    |||||||| || || ||||||||| ||| |||||| ||||||||||| ||| ||||||||||||||||    
T  8371652 gaatttatagtaggagacatccaaaaccgaatgagtgaaggaaaaacttcatgtgataatccttcata 8371719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 14766611 - 14766803
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcc 112  Q
    ||||||||| |||||| ||||||||||||| | | ||| | | | |||||||||||||||||| ||||||  |||| ||||||     ||||||   |      
T  14766611 gaacctgtgataagcttttgccaagagtatttataactgtgtcgtaacttcccattccaatcaaaagtgacctcaacgaaagaacagagatttgtgatgt 14766710  T
Q  113 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattg 208  Q
    ||||||||||   ||||  |||||||||||  |||||| ||||||||||||||||||| |||||||  | || |||||| |||  |||||||||||    
T  14766711 atgtgatgtt---tccagttcagtaaaatttgcatcatgtagatcatcaataaatcttgttaattcccgggttagttgaatcttcgagtggcattg 14766803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 4710 - 4764
Alignment:
Q  347 tggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    ||||||||||||||||| || |||| ||||||| ||||| ||||| |||||||||    
T  4710 tggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttca 4764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 9883 - 9833
Alignment:
Q  351 gacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttca 401  Q
    ||||||||||| | |||||||||||| || ||||||||||| |||||||||    
T  9883 gacatccaagagcgaatgagagaagggaatacatcacgtgaaaatccttca 9833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 8782 - 8839
Alignment:
Q  345 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcat 402  Q
    ||||| ||||||||||||  ||||| ||| ||||| ||||||||||| ||||||||||    
T  8782 gttggagacatccaagacttaatgatagatggaaacacatcacgtgagaatccttcat 8839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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