View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_low_1 (Length: 588)
Name: NF17469_low_1
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 47077078 - 47077616
Alignment:
| Q |
18 |
agtacgaacgtagatgttaaaaagaagagaaggagaatctcctatcaaatctaaaacaacaaacggtgatggcaaatgaatattccatttaccccccaat |
117 |
Q |
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| T |
47077078 |
agtacgaacgtagatgttaaaaagaagagaaggagaatctcctatcaaatctaaaacagcaaacggtgatggcaaatgaatattccatttaccccccaat |
47077177 |
T |
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| Q |
118 |
gtaataacaacaatgtcacactagaaaaggtgtattcaccattttctactttctaaggga-caacaagctaagttacagagacactacacccacagttca |
216 |
Q |
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| T |
47077178 |
gtaataacaacaatgtcacactagaaaaggtgtattcaccattttctactttctaagggaacaacaagctaagt-----------------cacagttca |
47077260 |
T |
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| Q |
217 |
caaaattacaagtggtgaataatataggtaaattagaaaaatatgtgactagcttggtctattatttttccaattgagtaacaaatttactacaaacaaa |
316 |
Q |
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| T |
47077261 |
caaaattacaagtggtgaataatataggtaaattggaaaaatatgtgactagcttggtctattatttttccaattcagtaacaaatttactacaaacaaa |
47077360 |
T |
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| Q |
317 |
atcatccatactannnnnnn-ctgtaagacatagacattaatcataggcttatcccgcaatatccgttcacgtggctgagtagtgtttggactcttacta |
415 |
Q |
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| T |
47077361 |
atcatccatactattttttttctgtaagacatagacattaatcataggcttatcccgcaatatccgttcacgtggctgagtagtgtttggactcttacta |
47077460 |
T |
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| Q |
416 |
agttacatacacttaaattcttatgatcgcattttccaaaaaatgtgataataatgtacttgttgttgttgatgtaatactctcctctatagtccttctc |
515 |
Q |
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| T |
47077461 |
atttacatacacttaaattcttatgatcgcattttccaaaaaatgtgataataatgtacttgttgttgttgatgtaatactctcctctatagtccttctc |
47077560 |
T |
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| Q |
516 |
ctattcagcttaatatatccttcactgcagccttttcatttcccttctcctatctg |
571 |
Q |
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| T |
47077561 |
ctattcagcttaatatatccttcactgcagccttttcatttcccttcccctatctg |
47077616 |
T |
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