View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_low_10 (Length: 394)
Name: NF17469_low_10
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 562853 - 562483
Alignment:
| Q |
9 |
caaaaatatcgtaattaaattgtttttgaggtaaagctatatgaaagcagataaaatatgattatattttcatctcctaaatgcatttaacaaatattat |
108 |
Q |
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| T |
562853 |
caaaaaaatcgttattaaattatttttgaggtaaagctatatgaaagcagataaaatatgattattttttcatctccttaatgcatttaacaaacattat |
562754 |
T |
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| Q |
109 |
ataagaatgtgtatgacgtttttagcttaaatatatgaccggaaagaatatcatattcgcttctaattatatggttgagctaagaacatgatccatatcc |
208 |
Q |
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| T |
562753 |
ataagaatgtgtataacatttttagcttaaatatatgatcggaaagaatatcatattcgcttataattatatgtttgagctaagaacgcgatccatatcc |
562654 |
T |
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| Q |
209 |
ttacataaataaatttaatttgtgaaatgcatttaagtaatgaaaaaacaattttagacattctttaatttgtaaaactcactacgttagataatcaaga |
308 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
562653 |
ttacataaaaaaatttaatttgtgaaatgcatttaagtaatgaaaaaacaattttagacattctttaatttgtaaaactcactacgatagataatcaaga |
562554 |
T |
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| Q |
309 |
gtcatggagattgggagaccaactaatttgagttaagaaataaaagagatggagatccgtcgagttctaatt |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
562553 |
gtcatggagattgggagaccaactaatttgagttaagaaat-aaagagatggagatccgtcgaattctaatt |
562483 |
T |
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