View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_low_11 (Length: 367)
Name: NF17469_low_11
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_low_11 |
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| [»] scaffold0330 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 34483248 - 34483587
Alignment:
| Q |
20 |
atactgatgtttcttatctcaataaacgatatgtattttaatatgctggtggcataacttatgcttttcggctattaaacttttatttttggttacaata |
119 |
Q |
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| T |
34483248 |
atactgatgtttcttatctcaataaacgatatgtattttaatatgctggtggcataacttatgcttttcggctattaaacttttatttttggttacaata |
34483347 |
T |
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| Q |
120 |
cattaaaagatnnnnnnnnnnnnnnnnnnnnnctacaatcttaaatagaaggaaaaattattcttgcagtcccttaacttaatttcaaaaaacaatttcg |
219 |
Q |
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| T |
34483348 |
cattaaaagataaaaaaaacgaaaaaaaaaaactacaatcttaaatagaaggaaaaattactcttgtagttcattaacttaatttcaaaaaacaatttcg |
34483447 |
T |
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| Q |
220 |
tcttttaannnnnnncacttcattttgatccttatggtccatttgaatataaattttcaagcttccattatatgtgtgatgctaatgattgatgtttata |
319 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34483448 |
tcttttaatttttttcacttcattttgatccttatggtccatttgaatatgaattttcaagcttcaattatatgtgtgatgctaatgattgatgtttata |
34483547 |
T |
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| Q |
320 |
tgttgtgtatggtttatattatgcgtgattaatattcttc |
359 |
Q |
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| T |
34483548 |
tgttgtgtatggtttatattatgcgtgattaatattcttc |
34483587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 34394191 - 34394129
Alignment:
| Q |
296 |
tgatgctaatgattgatgtttatatgttgtgtatggtttatattatgcgtgattaatattctt |
358 |
Q |
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| T |
34394191 |
tgatcctaatgattgatgtttatatgttttgtatggtttatattacgtgtaattaatattctt |
34394129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 34389101 - 34389049
Alignment:
| Q |
304 |
atgattgatgtttatatgttgtgtatggtttatattatgcgtgattaatattct |
357 |
Q |
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| T |
34389101 |
atgattgat-tttatatgttgtgtatggtttatattatgtgtcattaatattct |
34389049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 34388302 - 34388266
Alignment:
| Q |
296 |
tgatgctaatgattgatgtttatatgttgtgtatggt |
332 |
Q |
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| T |
34388302 |
tgatgctgatgattgatgtttatatgttgtgtatggt |
34388266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 34393328 - 34393294
Alignment:
| Q |
304 |
atgattgatgtttatatgttgtgtatggtttatat |
338 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
34393328 |
atgattgatgtttaaatgttgtgtatggtttatat |
34393294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 34484357 - 34484391
Alignment:
| Q |
304 |
atgattgatgtttatatgttgtgtatggtttatat |
338 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
34484357 |
atgattaatgtttatatgttgtgtatggtttatat |
34484391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 1975 - 2030
Alignment:
| Q |
304 |
atgattgatgtttatatgttgtgtatggtttatattatgcgtgattaatattcttc |
359 |
Q |
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|||||||||||||| ||||||||||||||||||||||| | | ||||||||||| |
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| T |
1975 |
atgattgatgtttagctgttgtgtatggtttatattatgtataagtaatattcttc |
2030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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