View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_low_15 (Length: 317)
Name: NF17469_low_15
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 44512503 - 44512689
Alignment:
| Q |
15 |
cataggtgaagttattataatatcaaggttataaataagtgatttatcattattatgattatcaaatgaataaatgaaaaatttaattatgttagaataa |
114 |
Q |
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| T |
44512503 |
cataggtgaagttattataatatcaaggttataaataagtgatttatcattgttatgattatcaaatgaatgaatgaaaaatttaattatgttagaataa |
44512602 |
T |
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| Q |
115 |
tatagttgtaattttagtcctttttagagtatgatatctctcatttaggaacaacccaaaagttgttcattacagaatcagtacaat |
201 |
Q |
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| T |
44512603 |
tatagtcgtaatttttgtcctttttagagtatgatatctctcatataggaacaactcaaaagttgttcattacagaattagtacaat |
44512689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 44512688 - 44512740
Alignment:
| Q |
247 |
atagaagaattcaagcagcagagaacatagctagtattaaactcagtgaatta |
299 |
Q |
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| T |
44512688 |
atagaagaattcaagcaggagagaacatagctagtattaaactcaatgaatta |
44512740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 45134665 - 45134613
Alignment:
| Q |
136 |
ttttagagtatgatatctctcatttaggaacaacccaaaagttgttcattaca |
188 |
Q |
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| T |
45134665 |
ttttagaatattatctctctcatttataaacaacccaaaagttgttcattaca |
45134613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 37860350 - 37860305
Alignment:
| Q |
79 |
aatgaataaatgaaaaatttaattatgttagaataatatagttgta |
124 |
Q |
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| T |
37860350 |
aatgaatgaatgaagaatttagttatgttagaatgatatagttgta |
37860305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 56329237 - 56329328
Alignment:
| Q |
44 |
tataaataagtgatttatcattattatgattatcaaatgaataaatgaaaaatttaattatgttagaataatatagttgtaa-ttttagtcc |
134 |
Q |
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| T |
56329237 |
tataaataattggttggtcattataatcattatcaaatgaatgaatggagaatataattatgttacaatattgtagttgtaacttttagtcc |
56329328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 18102741 - 18102696
Alignment:
| Q |
79 |
aatgaataaatgaaaaatttaattatgttagaataatatagttgta |
124 |
Q |
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| T |
18102741 |
aatgaatgaatgaagaatttagttatgttagaatgatatagttgta |
18102696 |
T |
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