View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17469_low_18 (Length: 297)
Name: NF17469_low_18
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 55670981 - 55670703
Alignment:
| Q |
1 |
gcaatgaaaaagggaaggggcaactcagtaggcacatgagtgacagttctgttgctgccactgaggacgatgatgatgacgttgataagaagattgatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55670981 |
gcaatgaaaaagggaaggggcaactcagtaggcacatgagtgacagttctgttgctgccactgaggacgatgatgatgacgttgataagaagattgatgt |
55670882 |
T |
|
| Q |
101 |
tggtcctcaattcactttgaaagagcaactcgaaaaggataaggttcacnnnnnnnnnnnnnnnnnnnnncttcgaaaaatatccatgctttgttctcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55670881 |
tggtcctcaattcactttgaaagagcaactcgaaaaggataaggttcacttttctttttgatgtttttttcttcgaaaaatatccatgctttgttctcat |
55670782 |
T |
|
| Q |
201 |
gttaattaatcatttatgcatttgttaattgttttcttcctgagtccttaggatgatgagagcttgaggaagtggaagg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55670781 |
gttaattaatcatttatgcatttgttaattgttttcttcctgagtccttaggatgatgagagcttgaggaagtggaagg |
55670703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 9216088 - 9215976
Alignment:
| Q |
34 |
acatgagtgacagttctgttgctgccactgaggacgatgatgatgacgttgataagaagattgatgttggtcctcaattcactttgaaagagcaactcga |
133 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| || |||||||| | |||| ||||||||| | ||||| |||| || || || || ||||| || |
|
|
| T |
9216088 |
acatgagtgagagttctgttgctgctactgaggaggaagatgatgatgaagataggaagattgagttgggtccacaatgtaccttaaaggaacaacttga |
9215989 |
T |
|
| Q |
134 |
aaaggataaggtt |
146 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9215988 |
aaaggataaggtt |
9215976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University