View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_low_2 (Length: 583)
Name: NF17469_low_2
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 11 - 568
Target Start/End: Original strand, 46167086 - 46167643
Alignment:
| Q |
11 |
cagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaagttcacagccttccaggtatgaacaacttaattaggtgcttgtcgtcg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46167086 |
cagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaagttcacagccttccaggtatgaacaacttaattaggcgcttgtcgtcg |
46167185 |
T |
|
| Q |
111 |
cataatcgcttatcatatacgtgcttctgtataagcaatttctaccactagataaaatcaaattgtattcatataagctatatcatattttcataagctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167186 |
cataatcgcttatcatatacgtgcttctgtataagcaatttctaccactagataaaatcaaattgtattcatataagctatatcatattttcataagctc |
46167285 |
T |
|
| Q |
211 |
tttcaaacagtctcacaatatatctctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167286 |
tttcaaacagtctcacaatatatctctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcat |
46167385 |
T |
|
| Q |
311 |
acagacagatgaagatattttctgcagttctgttaggtagccacagtttcaaactagcagaccaaaataaattggtgaaatatagaacctcgcttactct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167386 |
acagacagatgaagatattttctgcagttctgttaggtagccacagtttcaaactagcagaccaaaataaattggtgaaatatagaacctcgcttactct |
46167485 |
T |
|
| Q |
411 |
acaaattgatgatgggctgcatgtgaatgcttttcatagaaataaataatggccttactaaagggcacacatttagaatactatattgatgaaatactac |
510 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167486 |
acaaattgatgatgggctgcatgtgaatgcttttcacagaaataaataatggccttactaaagggcacacatttagaatactatattgatgaaatactac |
46167585 |
T |
|
| Q |
511 |
tttattttactatattgatgttgtttgctgtcttgagaaggtgaggtgttgttgttag |
568 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46167586 |
tttattttactatattgatgttgtttgctgtcttgagaaggtgagctgttgttgttag |
46167643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 235 - 518
Target Start/End: Original strand, 46160794 - 46161077
Alignment:
| Q |
235 |
tctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcatacagacagatgaagatattttctg |
334 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46160794 |
tctatgtaactttactgtcaatgtgacatcctaacacaggcgggtccaagaatttgtcttggcaaggagtttgtatacagacagatgaagatattttctg |
46160893 |
T |
|
| Q |
335 |
cagttctgttaggtagccacagtttcaaactagcagaccaaaataaattggtgaaatatagaacctcgcttactctacaaattgatgatgggctgcatgt |
434 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||| ||||||| |
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| T |
46160894 |
cagttctgttaggtagtcacaacttcaaactagcagaccaaaatagattggtgaaatatagaaccacgctcactctacaaattgatggtgggttgcatgt |
46160993 |
T |
|
| Q |
435 |
gaatgcttttcatagaaataaataatggccttactaaagggcacacatttagaatactatattgatgaaatactactttatttt |
518 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||| |||| ||||||| ||||||||| |||||| |||||||||||||| |
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| T |
46160994 |
gaatgcttttcatagaaataaataatggcctcactaaatggcatacatttaccatactatatggatgaattactactttatttt |
46161077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 275 - 496
Target Start/End: Original strand, 46182598 - 46182819
Alignment:
| Q |
275 |
cgggtccaagaatttgccttggcaaggagtttgcatacagacagatgaagatattttctgcagttctgttaggtagccacagtttcaaactagcagacca |
374 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||| | |||||||||||||| |
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| T |
46182598 |
cgggtccaagagtttgccttggcaagaagtttgcatacagacatataaagatattttctgcagttctattaggtagccacaactataaactagcagacca |
46182697 |
T |
|
| Q |
375 |
aaataaattggtgaaatatagaacctcgcttactctacaaattgatgatgggctgcatgtgaatgcttttcatagaaataaataatggccttactaaagg |
474 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |
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| T |
46182698 |
aaataaattggtgaaatatagaaccatgctcactctacaaattgatgatgggctgcatgtgaatacttttcacagaaataaataatggccttactaaatg |
46182797 |
T |
|
| Q |
475 |
gcacacatttagaatactatat |
496 |
Q |
| |
|
||||||||||| ||||||||| |
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| T |
46182798 |
gcacacatttaccatactatat |
46182819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 46160224 - 46160340
Alignment:
| Q |
11 |
cagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaagttcacagccttccaggtatgaacaacttaattaggtgcttgtcgtcg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| || | |
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| T |
46160224 |
cagagagatggcttgatgaaaatggaaattttcagagagaaagcccttttaagttcacagcctttcaggtatgaacaacttaattaggcgctt---gtag |
46160320 |
T |
|
| Q |
111 |
cataatcgcttatcatatac |
130 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
46160321 |
cataatcgcttatcatatac |
46160340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 26516212 - 26516256
Alignment:
| Q |
110 |
gcataatcgcttatcatatacgtgcttctgtataagcaatttcta |
154 |
Q |
| |
|
|||||| ||||||||||||| |||||| ||||||||| ||||||| |
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|
| T |
26516212 |
gcataagcgcttatcatataagtgcttatgtataagctatttcta |
26516256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 28283593 - 28283561
Alignment:
| Q |
196 |
tattttcataagctctttcaaacagtctcacaa |
228 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
28283593 |
tattttcataagttctttcaaacagtctcacaa |
28283561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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