View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17469_low_20 (Length: 259)

Name: NF17469_low_20
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17469_low_20
NF17469_low_20
[»] chr2 (1 HSPs)
chr2 (17-257)||(28438653-28438893)
[»] chr8 (1 HSPs)
chr8 (128-257)||(10647298-10647428)
[»] chr3 (2 HSPs)
chr3 (120-214)||(32197680-32197774)
chr3 (127-199)||(10942367-10942439)
[»] chr4 (2 HSPs)
chr4 (126-256)||(17263254-17263383)
chr4 (130-174)||(48747466-48747510)
[»] chr6 (2 HSPs)
chr6 (126-243)||(24322427-24322544)
chr6 (106-246)||(11005066-11005205)
[»] chr5 (3 HSPs)
chr5 (127-250)||(19963974-19964097)
chr5 (130-250)||(27248057-27248177)
chr5 (127-255)||(15434918-15435046)
[»] chr1 (1 HSPs)
chr1 (125-174)||(36976830-36976880)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 28438653 - 28438893
Alignment:
Q  17 gttattttgatggaatttagcgtccttccatatttcaagtactcctcaatcattctaaaggttatacgggtacaaggtcgtcaatcctataggattccgt 116  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  28438653 gttattctgatggaatttagcgtccttccatatgtcaagtactcctcaatcattctaaaggtcatacgggtacaaggtcgtcaatcctataggatttcgt 28438752  T
Q  117 aaatggtcggatagttattaaggcggggacttaatctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatt 216  Q
    |||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28438753 aaatggtcggatagttattaaggcagggacttactctctcgtatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatt 28438852  T
Q  217 ttttcctatgaagctcagaatttcaccacatacctttgctt 257  Q
    ||| |||||||| ||||||||||||||||||| ||||||||    
T  28438853 tttacctatgaatctcagaatttcaccacatatctttgctt 28438893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 10647298 - 10647428
Alignment:
Q  128 tagttattaaggcggggacttaa-tctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccattttttcctatg 226  Q
    |||||||||||| |||||||||| ||||||||| ||||||||| || |  ||||||| ||||||||||||||||||| |||||||||| |||| | ||||    
T  10647298 tagttattaaggtggggacttaactctctcataggtaattgaaacagaatcatagtatatattcctaaattgtcatctaaagaaaccacttttacatatg 10647397  T
Q  227 aagctcagaatttcaccacatacctttgctt 257  Q
    || ||   |||||||||||||||| ||||||    
T  10647398 aatcttcaaatttcaccacatacccttgctt 10647428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 32197680 - 32197774
Alignment:
Q  120 tggtcggatagttattaaggcggggacttaatctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaacca 214  Q
    |||||||||||||||||||| ||||||||| ||||||| | |||||| || ||||||||||||| | ||||||||||||| ||| |||| |||||    
T  32197680 tggtcggatagttattaaggtggggacttactctctcacaggtaattaaaacatagacatagtagaaattcctaaattgtaatctaaaggaacca 32197774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 10942367 - 10942439
Alignment:
Q  127 atagttattaaggcggggacttaatctctcatatgtaattgaaccatagacatagtaaatattcctaaattgt 199  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||| || | ||  ||| ||||||||||||||||    
T  10942367 atagttattaaggtggggacttactctctcataggtaattgaaacaaaaacgaagttaatattcctaaattgt 10942439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 17263254 - 17263383
Alignment:
Q  126 gatagttattaaggcggggacttaatctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccattttttcctat 225  Q
    |||||||||||  | ||||||||| ||||||| | ||||||||  ||||||||||||| | |||||||||||||| |  |||| ||||| |||| ||||     
T  17263254 gatagttattattgtggggacttactctctcacaagtaattgatacatagacatagtagaaattcctaaattgtcgtttaaag-aaccacttttacctag 17263352  T
Q  226 gaagctcagaatttcaccacatacctttgct 256  Q
    ||| || ||||||||| |||||||| |||||    
T  17263353 gaatcttagaatttcatcacatacccttgct 17263383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 48747466 - 48747510
Alignment:
Q  130 gttattaaggcggggacttaatctctcatatgtaattgaaccata 174  Q
    |||||||||||||||||||| |||||||||  |||||||| ||||    
T  48747466 gttattaaggcggggacttactctctcatagataattgaaacata 48747510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 24322544 - 24322427
Alignment:
Q  126 gatagttattaaggcggggacttaatctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccattttttcctat 225  Q
    |||||||||||||| || ||||||  || ||| ||||||||||| |||| |||||||| ||| ||||||||||||||| |||  ||||| ||||  ||||    
T  24322544 gatagttattaaggtggagacttatactttcacatgtaattgaaacataaacatagtagatagtcctaaattgtcatctaaatgaaccacttttatctat 24322445  T
Q  226 gaagctcagaatttcacc 243  Q
    ||| || | |||||||||    
T  24322444 gaaacttataatttcacc 24322427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 11005205 - 11005066
Alignment:
Q  106 taggattccgtaaatggtcggatagttattaaggcggggacttaatctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaa 205  Q
    ||||||| |||| |||||| ||||||||| |||| ||||| |||  ||||| || |||| ||||  |||  |||| || ||||||||||| ||||||| |    
T  11005205 taggatttcgtacatggtcagatagttatcaaggtggggagttacactctcgtaggtaactgaaatataagcata-tagatattcctaaagtgtcatcta 11005107  T
Q  206 aagaaaccattttttcctatgaagctcagaatttcaccaca 246  Q
    ||| ||||| |||| |||||||| || ||||||||||||||    
T  11005106 aaggaaccacttttacctatgaatcttagaatttcaccaca 11005066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 19963974 - 19964097
Alignment:
Q  127 atagttattaaggcggggacttaatctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccattttttcctatg 226  Q
    ||||||||||||| || |||||| ||||||| | |||||||||  |||  |||| || | ||| ||||||||||||| || ||||| | |||| ||||      
T  19963974 atagttattaaggtggagacttactctctcacaggtaattgaattataagcataatagaaatttctaaattgtcatctaaggaaacaacttttacctaga 19964073  T
Q  227 aagctcagaatttcaccacatacc 250  Q
    || || ||||||||||||||||||    
T  19964074 aatcttagaatttcaccacatacc 19964097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 27248177 - 27248057
Alignment:
Q  130 gttattaaggcggggacttaatctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccattttttcctatgaag 229  Q
    ||||||||| ||| |||||  ||||||| ||| ||||||| ||||  ||||||| | ||||||||||||  ||  |||| ||||| |||| |||| |||     
T  27248177 gttattaagacggagactttgtctctcacatgcaattgaaacatatgcatagtataaattcctaaattgatatataaaggaaccacttttacctaagaat 27248078  T
Q  230 ctcagaatttcaccacatacc 250  Q
    || | ||||||||||||||||    
T  27248077 cttaaaatttcaccacatacc 27248057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 255
Target Start/End: Complemental strand, 15435046 - 15434918
Alignment:
Q  127 atagttattaaggcggggacttaatctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccattttttcctatg 226  Q
    |||||||||||| || | |||||  ||||||||  |||||||| ||||  || |||  ||||||||||||| ||||| |||| || || |||| | ||||    
T  15435046 atagttattaagacgagaacttacactctcatagataattgaaacataagcagagttgatattcctaaattttcatctaaaggaatcacttttgcgtatg 15434947  T
Q  227 aagctcagaatttcaccacatacctttgc 255  Q
    || || ||||||| || ||||||| ||||    
T  15434946 aatcttagaatttgacgacatacccttgc 15434918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 36976830 - 36976880
Alignment:
Q  125 ggatagtta-ttaaggcggggacttaatctctcatatgtaattgaaccata 174  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||| ||||    
T  36976830 ggatagttagttaaggcggggacttactctctcacatgtaattgaaacata 36976880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University