View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17469_low_24 (Length: 212)

Name: NF17469_low_24
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17469_low_24
NF17469_low_24
[»] chr5 (3 HSPs)
chr5 (14-193)||(20838983-20839162)
chr5 (13-193)||(20812628-20812808)
chr5 (12-94)||(12598803-12598885)
[»] chr8 (10 HSPs)
chr8 (13-193)||(3398190-3398370)
chr8 (13-193)||(31176198-31176378)
chr8 (12-181)||(3375712-3375880)
chr8 (112-191)||(3324769-3324848)
chr8 (14-96)||(3407006-3407088)
chr8 (12-98)||(7164327-7164413)
chr8 (13-92)||(3391203-3391282)
chr8 (13-97)||(3429652-3429740)
chr8 (126-191)||(3262410-3262475)
chr8 (145-181)||(3391332-3391368)
[»] chr6 (1 HSPs)
chr6 (128-191)||(31059594-31059657)
[»] chr3 (2 HSPs)
chr3 (13-93)||(6905497-6905577)
chr3 (14-191)||(32410763-32410937)
[»] chr7 (1 HSPs)
chr7 (122-178)||(8371420-8371476)
[»] chr2 (1 HSPs)
chr2 (13-178)||(14766611-14766773)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 20839162 - 20838983
Alignment:
Q  14 aacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20839162 aacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaagaaaagatttttgatttggtgtcca 20839063  T
Q  114 tgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgatt 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20839062 tgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgatt 20838983  T

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Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 20812808 - 20812628
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |    
T  20812808 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtaatttcaaggaaagattttcgatttggtgtgc 20812709  T
Q  113 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgatt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20812708 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaatatatcttcttaattcttgagtaagttgatt 20812628  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 12598803 - 12598885
Alignment:
Q  12 agaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaag 94  Q
    |||||||||| || | ||||||||||||| ||  |||| | |||| |||| ||||||||||||| ||||||| |||| |||||    
T  12598803 agaacctgtgatatgttcttgccaagagtgtcgatgacaagttggaaactccccattccaatcaaaagtgatctcaaagaaag 12598885  T

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Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 3398190 - 3398370
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcc 112  Q
    |||||||||||||||||||  ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  3398190 gaacctgtgctaagctcttatcaagagtatccatgactatttgggaacttcccattccaatcacaattgatttcaaggaaagatttgtgatttggtgtcc 3398289  T
Q  113 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgatt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3398290 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgatt 3398370  T

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Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 31176378 - 31176198
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcc 112  Q
    |||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||||||||||    
T  31176378 gaacctgtgctaagctcttgtcaagagtatccaagactatttgggaacttcccattccaatcccaattgatttcaaggaaatatttgtgatttggtgtcc 31176279  T
Q  113 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgatt 193  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31176278 atatgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgatt 31176198  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 3375880 - 3375712
Alignment:
Q  12 agaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtc 111  Q
    |||||||||| || | ||||| ||||||| ||  |||| | |||| |||| || |||||||||| ||||||| |||| |||||| ||   ||| |  |||    
T  3375880 agaacctgtgatatgttcttgacaagagtgtca-tgacaagttggaaactccctattccaatcaaaagtgatctcaaagaaagacttgacattcgtggtc 3375782  T
Q  112 catgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttg 181  Q
     ||| |||||||||| |||||| ||||| || |||||||| |||||||||| |||| |||||||||||||    
T  3375781 tatgcgatgttgttttcaactcggtaaagtttacatcatacagatcatcaacaaattttcttaattcttg 3375712  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 3324769 - 3324848
Alignment:
Q  112 catgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttga 191  Q
    |||||||| ||||||| ||||  |||||| | ||||||||||||||||||| |||  |||||||||||||||| ||||||    
T  3324769 catgtgatattgtttcgaacttggtaaaacttacatcatatagatcatcaaaaaagtttcttaattcttgagtcagttga 3324848  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 3407006 - 3407088
Alignment:
Q  14 aacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagat 96  Q
    |||||| | |||||||||||||||||| ||  ||||| | ||| |||||||||||||||||| ||| |||| |||||||||||    
T  3407006 aacctgcgataagctcttgccaagagtctcgttgactttgtggtaacttcccattccaatcaaaagagattgcaaggaaagat 3407088  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 7164327 - 7164413
Alignment:
Q  12 agaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagattt 98  Q
    |||||||| | || |||||||||| |||||||  ||| ||| ||  |||||||||||||||||| ||||||| ||||||||||||||    
T  7164327 agaacctgggatatgctcttgccacgagtatcaatgattatgtgacaacttcccattccaatcaaaagtgatctcaaggaaagattt 7164413  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 3391203 - 3391282
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaa 92  Q
    ||||||||| ||||||||| |||||| |||   ||||||| ||| || ||||||||||||||| ||| ||| ||||||||    
T  3391203 gaacctgtgataagctcttcccaagaatattgatgactatgtggcaatttcccattccaatcaaaagagatctcaaggaa 3391282  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 3429740 - 3429652
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactattt----gggaacttcccattccaatcacaagtgatttcaaggaaagatt 97  Q
    ||||||||| ||| |||||||||||||||||  ||||||| |    || |||||||||||||||||| ||| ||| ||||| |||||||    
T  3429740 gaacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcataagagatctcaagaaaagatt 3429652  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 3262410 - 3262475
Alignment:
Q  126 tccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttga 191  Q
    ||||| ||||||||||| |||||| || ||||||||| || ||||| ||||||| |||| ||||||    
T  3262410 tccaattcagtaaaatttacatcacattgatcatcaagaattcttcgtaattctcgagttagttga 3262475  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 3391332 - 3391368
Alignment:
Q  145 catcatatagatcatcaataaatcttcttaattcttg 181  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  3391332 catcatatagatcatcaagaaatcttctgaattcttg 3391368  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 31059594 - 31059657
Alignment:
Q  128 caactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttga 191  Q
    |||||||||||||||||  |||||||| ||||||| ||||||||||||||||||||| ||||||    
T  31059594 caactcagtaaaattcaattcatataggtcatcaagaaatcttcttaattcttgagttagttga 31059657  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 6905497 - 6905577
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaa 93  Q
    ||||||||| |||||||||||||||||||||   |||||| ||| |||||||||||  ||||| ||| |||||||||||||    
T  6905497 gaacctgtgataagctcttgccaagagtatcgacgactatgtggcaacttcccattgtaatcaaaagagatttcaaggaaa 6905577  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 32410763 - 32410937
Alignment:
Q  14 aacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcca 113  Q
    |||||||| || ||||||||||||||||||  | ||||| ||| |||||||||||| ||||| ||| ||  |||| ||| |||||  || |||   | ||    
T  32410763 aacctgtgatatgctcttgccaagagtatcaataactatgtggcaacttcccattctaatcaaaagcgacctcaaagaatgatttgagaattgtgatgca 32410862  T
Q  114 tgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttga 191  Q
    |||||    ||||||||||  ||||| ||| |||||||| || || ||| || ||||| |||||||||||| ||||||    
T  32410863 tgtga---cgtttccaacttggtaaagttcgcatcatattgaccaccaagaattcttcgtaattcttgagttagttga 32410937  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 8371420 - 8371476
Alignment:
Q  122 tgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattc 178  Q
    ||||||||  |||||||||||  |||||||||||||||||| |||||||||||||||    
T  8371420 tgtttccagttcagtaaaatttgcatcatatagatcatcaagaaatcttcttaattc 8371476  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 14766611 - 14766773
Alignment:
Q  13 gaacctgtgctaagctcttgccaagagtatctgtgactatttgggaacttcccattccaatcacaagtgatttcaaggaaagatttttgatttggtgtcc 112  Q
    ||||||||| |||||| ||||||||||||| | | ||| | | | |||||||||||||||||| ||||||  |||| ||||||     ||||||   |      
T  14766611 gaacctgtgataagcttttgccaagagtatttataactgtgtcgtaacttcccattccaatcaaaagtgacctcaacgaaagaacagagatttgtgatgt 14766710  T
Q  113 atgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattc 178  Q
    ||||||||||   ||||  |||||||||||  |||||| ||||||||||||||||||| |||||||    
T  14766711 atgtgatgtt---tccagttcagtaaaatttgcatcatgtagatcatcaataaatcttgttaattc 14766773  T

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