View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_low_25 (Length: 201)
Name: NF17469_low_25
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 20565371 - 20565514
Alignment:
| Q |
44 |
ggctacttaagaacttagattgataatttgaaaaattcatatgaaacaaaaataaagacatgatgatcctaaatataacaaggttgtcaagttaccttga |
143 |
Q |
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| T |
20565371 |
ggctacttaagaacttagattgataatttgaaaaattcatatgaaacaaaaataaggacatgatgatcctaaatataacaaggttgtcaagttaccttga |
20565470 |
T |
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| Q |
144 |
actgtggattatcttgttcatcaaatacttattcgtagtctgtg |
187 |
Q |
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| T |
20565471 |
actgtggattatcttgttcatcaagtacttattcgtagtctgtg |
20565514 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 26062637 - 26062725
Alignment:
| Q |
68 |
aatttgaaaaattcatatgaaacaaaaataaagacatgatgatcctaaatataacaaggttgtcaagttaccttgaactgtggattatctt |
158 |
Q |
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||||||||||||| || ||||||||||||| |||||| | ||| ||||||||||||||||||||| |||||| | ||| ||||||||| |
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| T |
26062637 |
aatttgaaaaattaat--gaaacaaaaataaggacatggtaatcttaaatataacaaggttgtcaaagtaccttatattgtagattatctt |
26062725 |
T |
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