View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_low_3 (Length: 513)
Name: NF17469_low_3
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 86 - 337
Target Start/End: Complemental strand, 2517033 - 2516782
Alignment:
| Q |
86 |
taccggatctttgttaagatatgtttttgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaagg |
185 |
Q |
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| T |
2517033 |
taccggatctttgttaagatatgtttttgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaagg |
2516934 |
T |
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| Q |
186 |
aacatgaatttgaccgtttgttactatccattgcatgcaaatgttggagtgagcatgtttagtatgtgtgataccacatggcttaataatttggagtgca |
285 |
Q |
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| T |
2516933 |
aacatgaatttgaccgtttgttactatccattgcatgcaaatgttggagtgagcatgtttagtatgtgtgataccacatggcttaataatttggagtgca |
2516834 |
T |
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| Q |
286 |
cataaatttattatatttggtcttgctactatactaaataccattgctgtga |
337 |
Q |
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| T |
2516833 |
cataaatttattatatttggtcttgctactatactaaataccattgctgtga |
2516782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 104 - 275
Target Start/End: Complemental strand, 2512779 - 2512608
Alignment:
| Q |
104 |
atatgtttttgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaaggaacatgaatttgaccgtt |
203 |
Q |
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| T |
2512779 |
atatgtttatgaagagagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataatttttagagaatgaaaggaacatgaatttaactgtt |
2512680 |
T |
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| Q |
204 |
tgttactatccattgcatgcaaatgttggagtgagcatgtttagtatgtgtgataccacatggcttaataat |
275 |
Q |
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| T |
2512679 |
acttactatctcttgcatgtaaatttggaagtgagcatgtttagtatgtgtgataccacatggctcaataat |
2512608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 113 - 291
Target Start/End: Complemental strand, 2509517 - 2509336
Alignment:
| Q |
113 |
tgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaaggaacatgaatttgaccgtttgttactat |
212 |
Q |
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| T |
2509517 |
tgaagaaagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataattttcagagaatgaaaggaacattaatttaactgttacttactat |
2509418 |
T |
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| Q |
213 |
ccattgcatgcaaatgttggagtgagcatgtttagtatgtgtgataccacatggcttaa---taatttggagtgcacataaa |
291 |
Q |
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| T |
2509417 |
ctcttgcatgtaaatttcgaagtgagcatgtttagtatgtgtgatactacatggcttaataataatttggagtgcacctaaa |
2509336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 435 - 495
Target Start/End: Complemental strand, 2516685 - 2516625
Alignment:
| Q |
435 |
gtcagtaatacgatatttgatggcattgtatcgccaaatacatttgttatctagatcatat |
495 |
Q |
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| T |
2516685 |
gtcagtaatacgatatttgatggcattgtatcgccaaatacatttgttatttagatcatat |
2516625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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