View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_low_5 (Length: 475)
Name: NF17469_low_5
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 258 - 460
Target Start/End: Complemental strand, 31957260 - 31957056
Alignment:
| Q |
258 |
ggttaagatgttcgttacttttatcttaagttttagaaatttaaaaaat-tatatttagttcatctcatgatgtgtcaacttagtgatagaaatatgact |
356 |
Q |
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| T |
31957260 |
ggttaagatgttcgttacttttatcttaagtttttgaaatttaaaaaaaatatatttagttcatctcatgatgtgtcaacttagtgataaaaatatgact |
31957161 |
T |
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| Q |
357 |
ttatatgtttgaaatatt-atattacattcaattgataaagtctatcatgttgtcaccttggcgataagaattttacttgacaacctcaaagaggcctag |
455 |
Q |
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| T |
31957160 |
ttatatgtttgaaatatttatattacattcaattgataaagtctatcatgttgtcaccttagcgttaagaattttacttgacaacctcaaagaggcctag |
31957061 |
T |
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| Q |
456 |
ttcat |
460 |
Q |
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||||| |
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| T |
31957060 |
ttcat |
31957056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 31957510 - 31957337
Alignment:
| Q |
16 |
caaagaatagttcacagcacaagtcaaattacaacaaaaggaaaccaacaacacaagaaaactagcaaagagagcattaagaatctaaatattacatttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31957510 |
caaagaatagttcacagcacaagtcaaattacaacaaaaggaaaccaacaacacaagaaaactagcaaagagagcattaagaatctaaatattacatttt |
31957411 |
T |
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| Q |
116 |
tgtccccacaaaatatttctacatggagatttagtttatgctattaaatcta--tatacgtacatatatgaatg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
31957410 |
tgtccccacaaaatatttctacatggagatttagtttatgctattaaatctatatatacatacatatatgaatg |
31957337 |
T |
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