View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17469_low_9 (Length: 399)
Name: NF17469_low_9
Description: NF17469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17469_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 38877121 - 38876792
Alignment:
| Q |
19 |
ctctgagtgtataatttactacctactagacaaccataaaatttcatgtcaagaaaactctatgcaactcgcattggatatatagtgttcatctaaaact |
118 |
Q |
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| T |
38877121 |
ctctgagtgtataatttactacctactagacaaccataaaatttcatgttaagaaaactctatgcaactcccattggatataga-----cat-----agt |
38877032 |
T |
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| Q |
119 |
catcaatttattataattgatagatgatggattatatttg-----caatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgc |
213 |
Q |
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| T |
38877031 |
aatcaatttattatacttgatagatgatggattatatttgatttgcaatatatagttgttgaccttaa----cttgtgtttaataatttgaatgacatgc |
38876936 |
T |
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| Q |
214 |
agtgacgacttgagagctctatttgaaagagcaaaagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagag |
313 |
Q |
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| T |
38876935 |
agtgaggacctgagagctctatttgaaagagcaaaagcaaagctgagatttaatcttgaaagcatgaacgaaacatggttgattaaggatataacaagag |
38876836 |
T |
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| Q |
314 |
catgggaaagttgtgttaaagatgcaattcttgattatgaacag |
357 |
Q |
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| T |
38876835 |
catgggaaagttgtgttaaagatgcaattcttgattatgaacag |
38876792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 148 - 378
Target Start/End: Complemental strand, 16628168 - 16627942
Alignment:
| Q |
148 |
gattatatttgcaatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttgagagctctatttgaaagagcaa |
247 |
Q |
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| T |
16628168 |
gattatatttgcaatatataattgttgaccataata----tgtgtttcataatttgaattacatgcagtgaggactttagagatttgtttgagagagcaa |
16628073 |
T |
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| Q |
248 |
aagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttgtgttaaagatgcaattcttga |
347 |
Q |
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| T |
16628072 |
aaggaaagctgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagcatgggaaggttgtgctagagaagcaatccttga |
16627973 |
T |
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| Q |
348 |
ttatgaacaggctattggtggggggacattt |
378 |
Q |
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| T |
16627972 |
atatgcacatgttaatggtggtggaacattt |
16627942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 148 - 378
Target Start/End: Complemental strand, 16637049 - 16636823
Alignment:
| Q |
148 |
gattatatttgcaatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttgagagctctatttgaaagagcaa |
247 |
Q |
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| T |
16637049 |
gattatatttgcaatatataattgttgaccataata----tgtgtttcataatttgaattacatgcagtgaggactttagagatttgtttgagagagcaa |
16636954 |
T |
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| Q |
248 |
aagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttgtgttaaagatgcaattcttga |
347 |
Q |
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| T |
16636953 |
aaggaaagctgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagcatgggaaggttgtgctagagaagcaatccttga |
16636854 |
T |
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| Q |
348 |
ttatgaacaggctattggtggggggacattt |
378 |
Q |
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| T |
16636853 |
atatgcacatgttaatggtggtggaacattt |
16636823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 130 - 378
Target Start/End: Complemental strand, 16616087 - 16615844
Alignment:
| Q |
130 |
tataattgatagatgatggattatatttgcaatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttgagag |
229 |
Q |
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| T |
16616087 |
tatacttgattgatgatggacaatatttgcaatgtatagctgttgaccataatt----tgtgtttcataatttgatt-acatgcagtgatgacctgagag |
16615993 |
T |
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| Q |
230 |
ctctatttgaaagagcaaaagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttgtgt |
329 |
Q |
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| T |
16615992 |
ctctttttgagaaagcaaaagcaaagctgagacttaaactgcaaagcacgaagcaaccatggttgattaaggatgtagctagagcatgggaaggttgtgc |
16615893 |
T |
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| Q |
330 |
taaagatgcaattcttgattatgaacaggctattggtggggggacattt |
378 |
Q |
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| T |
16615892 |
tagagaagcaatccttgaatatgcacatgctaatggtggtggaacattt |
16615844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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