View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1746_high_1 (Length: 506)
Name: NF1746_high_1
Description: NF1746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1746_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Complemental strand, 3089244 - 3088765
Alignment:
| Q |
16 |
ctatcagtaagtggttgaatttatagtttgtgacttgagttacctgatagagtcattccagatttaactccttcataaccccatttgcacgctatttgta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3089244 |
ctatcagtaagtggttgaatttatagtttgtgacttgagttacctgatagagtcattccagatttaactccttcataaccccatttgcacgctatttgta |
3089145 |
T |
|
| Q |
116 |
tgctctctttagcccaactacatgattagttcaaaacaagcacatccaaaataagaaatctaaacattatttaacatttggaggcaaaaagagattgctg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3089144 |
tgctctctttagcccaactacatgattagttcaaaacaagaag---caaaa--agaaatctaaacattaattaacatttggaggcaaaaagagattgctg |
3089050 |
T |
|
| Q |
216 |
aaattgaaagtggaagagaaaaggtgctcacttatttacacaactagagatatccttgcaatgttcccaagaagcaacatcatctgaccagattccctgc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3089049 |
aaattgaaagtggaagagaaaaggtgctcacttatttacacaactagagatatccttgcaatgttcccaagaagcaacatcatctgaccagattccctgc |
3088950 |
T |
|
| Q |
316 |
atacaagaaataataagttgattttatttggagccaataaaaaatccatgtgttcattcaatctaggaagagtgacagaaaaatttaaataatgttactt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088949 |
atacaagaaataataagttgattttatttggagccaataaaaaatccatgtgttcattcaatctaggaagagtgacagaaaaatttaaataatgttactt |
3088850 |
T |
|
| Q |
416 |
acattggtatagtttttctcaatgtcttggaggaggagtgtcacatctttgtcatagtaatctgctaatgctgtgagaataattt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088849 |
acattggtatagtttttctcaatgtcttggaggaggagtgtcacatctttgtcatagtaatctgctaatgctgtgagaataattt |
3088765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University