View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1746_high_12 (Length: 254)
Name: NF1746_high_12
Description: NF1746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1746_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 27589256 - 27589483
Alignment:
| Q |
15 |
aaaagactcacgttgattacccgacaaaatgttttatattcaagcatttagctcaatgtaaacctcatgtgttattaagtaatgtttcaattgtaatcac |
114 |
Q |
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| T |
27589256 |
aaaagactcacgttgattacccgacaaaatgttttatattcaagcatttagctcaatgtaaacctcatgtgttattaagtaatgtttcaattgtaatcac |
27589355 |
T |
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| Q |
115 |
gttatacttcacatcaaagttacaatatgacagtctattaattgaactacagcacttgcaaactatgtttaaaaattcagtggtttcaaaattcgacatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27589356 |
gttatacttcacatcaaagttacaatatgacagtctattaattgaactacagcacttgcaaactatgtttaaaaattcagtggtttcaaaattcgacatt |
27589455 |
T |
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| Q |
215 |
atgaaccatatgaaaaaccatcctccct |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
27589456 |
atgaaccatatgaaaaaccatcctccct |
27589483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 27673361 - 27673469
Alignment:
| Q |
134 |
ttacaatatgacagtctattaattgaactacagcacttgcaaactatgtttaaaaattcagtggtttcaaaattcgacattatgaaccatatgaaaaacc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27673361 |
ttacaatatgacagtctattaattgaactacagcacttgcaaactatgattaaaaattcagtggtttcaaaattcgacattatgaaccatatgaaaaacc |
27673460 |
T |
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| Q |
234 |
atcctccct |
242 |
Q |
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||||||||| |
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| T |
27673461 |
atcctccct |
27673469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 264469 - 264513
Alignment:
| Q |
134 |
ttacaatatgacagtctattaattgaactacagcacttgcaaact |
178 |
Q |
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|||||||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
264469 |
ttacaataagacagtctactaattgaactaaagcacttgcaaact |
264513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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