View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1746_high_6 (Length: 321)
Name: NF1746_high_6
Description: NF1746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1746_high_6 |
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| [»] chr7 (9 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 96 - 321
Target Start/End: Complemental strand, 7328522 - 7328297
Alignment:
| Q |
96 |
aagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7328522 |
aagtacataaattgaaataaatattatgttggagaaaaacttactttcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatat |
7328423 |
T |
|
| Q |
196 |
ctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatcaccatct |
295 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7328422 |
ctttttgttaactctagattccagtactctattagttctcaagttatagagaattgcttggttatgcaggcagcttgcgaatacgattgtatcaccatct |
7328323 |
T |
|
| Q |
296 |
tcagaaagatgcaatgcctttaattt |
321 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
7328322 |
tcagaaagatgcaatgcctttaattt |
7328297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 7310847 - 7311161
Alignment:
| Q |
6 |
attcggatccttcggttgatttaccatatctacgacaaagttttaaagtaaaggaaataatcacacaatcgaaacctagtnnnnnnnnccaagtacataa |
105 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
7310847 |
attcggatccttcggttgattcaccata-ctacgacaaagttttaaagtaaaggaaataatcatacaatcgaaacctagtaaaaaaaaacaagtacataa |
7310945 |
T |
|
| Q |
106 |
attgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgtta |
205 |
Q |
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| |||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7310946 |
actgaaataaatattatgttagaaaaaaacttactttcaataggttgaaaccagactttcgacataatccttgatagagaaccaacatatctttttgtta |
7311045 |
T |
|
| Q |
206 |
actctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagat |
305 |
Q |
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|||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
7311046 |
actctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttccgaatactattgtatcaccatcttcagaaagat |
7311145 |
T |
|
| Q |
306 |
gcaatgcctttaattt |
321 |
Q |
| |
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|||| | ||||||||| |
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| T |
7311146 |
gcaacggctttaattt |
7311161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 315
Target Start/End: Original strand, 7306297 - 7306603
Alignment:
| Q |
6 |
attcggatccttcggttgatttaccatatctacgacaaagttttaaagtaaaggaaataatcacacaatcgaaacctagtnnnnnnnnccaagtacataa |
105 |
Q |
| |
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|||||||||| | | |||||| |||||||||| | ||||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||| |
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| T |
7306297 |
attcggatccgttgattgattcaccatatctatggcaaagttttaaagtaaaggaaataatcgcacaattgaaaccaagtaaaaa---ccaagtacataa |
7306393 |
T |
|
| Q |
106 |
attgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgtta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7306394 |
attgaaataaatattatgttggagaaaaacctacgttcaataggttgagaccagactttcgacataatccttgatagagaaccaacatatctttttgttg |
7306493 |
T |
|
| Q |
206 |
actctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagat |
305 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7306494 |
actctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttgcgaatacgattgtatcaccatcttcagaaagat |
7306593 |
T |
|
| Q |
306 |
gcaatgcctt |
315 |
Q |
| |
|
|||||||||| |
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|
| T |
7306594 |
gcaatgcctt |
7306603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 311
Target Start/End: Original strand, 35205658 - 35205850
Alignment:
| Q |
127 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
226 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| |||||||||||||||||||||| | ||||||||||||| ||||||| | ||||| ||||| |||| |
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|
| T |
35205658 |
gagaacaacttacattcaactagttgaaaccaggctttcgacataatccttgatagtgaaccaacatatcttattgttaattgaagatttcagtactcta |
35205757 |
T |
|
| Q |
227 |
ttagttctcaagttatagagaat-----tgcttggttatgtaggcagcttgc---gaatacgattgtatcaccatcttcagaaagatgcaatg |
311 |
Q |
| |
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|| |||||| ||||||||||||| | |||||| | |||| | |||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
35205758 |
ttggttctccagttatagagaatataattacttggtgttttaggttgtttgctgcgaatacgagtgtatcaccatcctcagaaagatgcaatg |
35205850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 311
Target Start/End: Complemental strand, 20415161 - 20414999
Alignment:
| Q |
149 |
gttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaa |
248 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||||||| | || ||||||||||| | || || || | ||||| ||||| | |||||||||| |
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| T |
20415161 |
gttgaaaccagactttcaacataacagttgatagagaaccaacatttgttattgttaactctgggtttcaatactatattatttctccaattatagagaa |
20415062 |
T |
|
| Q |
249 |
ttgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatg |
311 |
Q |
| |
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||||| ||| ||||||| | |||||||||| | ||||||||||| || |||||||||||| |
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|
| T |
20415061 |
ttgctcggtcttgtaggctgtttgcgaatacaagtgtatcaccatttttgaaaagatgcaatg |
20414999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 321
Target Start/End: Original strand, 21210247 - 21210417
Alignment:
| Q |
150 |
ttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaat |
249 |
Q |
| |
|
|||||||||||||| |||||||||||| | || || |||||| |||||| | ||||| | | |||| ||||| | ||||| |||| |||||||| |||| |
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|
| T |
21210247 |
ttgaaaccagactt-cgacataatcctcggtacagaaccaacgtatcttatggttaattttggatttcagtactgtattatttctgaagttatatagaac |
21210345 |
T |
|
| Q |
250 |
tgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaattt |
321 |
Q |
| |
|
||||||||| || ||| | || ||||||| ||||||||| || |||||||||||||| | ||||||||| |
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|
| T |
21210346 |
tgcttggttttgcaggttgtttacgaatactattgtatcaatattttcagaaagatgcaccggctttaattt |
21210417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 21218375 - 21218426
Alignment:
| Q |
30 |
catatctacgacaaagttttaaagtaaaggaaataatcacacaatcgaaacc |
81 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||||||||||||| |||||| |
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| T |
21218375 |
catatctatgacaaagttttgaagcaaaggaaataatcacacaattgaaacc |
21218426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 35205534 - 35205601
Alignment:
| Q |
18 |
cggttgatttaccatatctacgacaaagttttaaagtaa----aggaaataatcacacaatcgaaacc |
81 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||| ||||||| | ||||||||||||||| |
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|
| T |
35205534 |
cggttgatttagcatatctatgacaaagttttgaagtaaagccaggaaatgaccacacaatcgaaacc |
35205601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 21218469 - 21218553
Alignment:
| Q |
128 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctag |
212 |
Q |
| |
|
|||| ||||||| |||| | |||||||||| |||||||||||||| | || ||| |||||| |||||||||||||| ||||| |
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|
| T |
21218469 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatcatagactgaggaccaacttatctttttgttaattctag |
21218553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 252
Target Start/End: Original strand, 31442749 - 31442874
Alignment:
| Q |
127 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
226 |
Q |
| |
|
||||| ||||||| |||| | |||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||| || || || |||| |
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|
| T |
31442749 |
gagaagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactcta |
31442848 |
T |
|
| Q |
227 |
ttagttctcaagttatagagaattgc |
252 |
Q |
| |
|
||| ||||| | |||||||||||||| |
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|
| T |
31442849 |
ttatttctccaattatagagaattgc |
31442874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 258
Target Start/End: Complemental strand, 24491 - 24360
Alignment:
| Q |
127 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
226 |
Q |
| |
|
||||| ||||||| ||| || |||| ||||| ||||| ||||||| || ||||| |||||||||||||||||||||| |||| || || || |||| |
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| T |
24491 |
gagaagaacttactctcaacaagttggaaccatgctttcaacataattgtttatagatcaccaacatatctttttgttaaccctagttttcactactcta |
24392 |
T |
|
| Q |
227 |
ttagttctcaagttatagagaattgcttggtt |
258 |
Q |
| |
|
||| || || | ||||||||||||||| |||| |
|
|
| T |
24391 |
ttatttatccaattatagagaattgctcggtt |
24360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 42298420 - 42298342
Alignment:
| Q |
128 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaa |
206 |
Q |
| |
|
|||| ||||||| |||| | |||||||||| |||||||||||||| || || ||| |||||||||||||| |||||| |
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| T |
42298420 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgaggaccaacatatctttctgttaa |
42298342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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