View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1746_low_10 (Length: 292)
Name: NF1746_low_10
Description: NF1746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1746_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 19772535 - 19772803
Alignment:
| Q |
9 |
aaatttgtttcataccccaaatgttgatattgttatattgaacaggaaattttacacttttgtatacatttgaatagtgtttgtcactttatctacggat |
108 |
Q |
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| T |
19772535 |
aaatttgtttcaaaccccaaatgttgatattgttatattgaacaagaaattttacacttttgtatacatttgaatagtgtttgtcactttatctacggat |
19772634 |
T |
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| Q |
109 |
caaaataaagacagaaaaacctcaaaagttagagtttattttcatctacatcgttccttcagatactattttttcatcgatgtgtgacgtcgaaagtgta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
19772635 |
caaaataaagacagaaaaacctcaaaagttagagtttattttcatctacatcgttccttcagatactattttttcagcgatgtgtgacatcgaaagtgta |
19772734 |
T |
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| Q |
209 |
attagtgaacttgaatggccaaaaaactatttattagattgtgataatctttcccttacacggaaatat |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19772735 |
attagtgaacttgaatggccaaaaaactatttattagattgtgataatctttcccttacacgaaaatat |
19772803 |
T |
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