View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1746_low_13 (Length: 259)
Name: NF1746_low_13
Description: NF1746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1746_low_13 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 57176 - 56929
Alignment:
| Q |
1 |
tgtggatttgatgaatattgatgttgattttcacggacatatgaaaggtatggtgtcggaagttattgttaatggaacctggaacatacctgcagtaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
57176 |
tgtggatttgatgaatattgatgttgattttcacggacatatgaaaggtatggtgtcggaagttatcgttaatggaacctggaacataccggcagtaatt |
57077 |
T |
|
| Q |
101 |
tcaaattttggggacattaaagagcgcctagatgttgtcgtcatacctcgtacacagctcagggatgtgctggtttggaagcactctttggatggaacct |
200 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57076 |
tcagattttagggacattaaagagcgcctagatgatgtcgtcatacctcgtacatagctcagggatgtgctggtttggaagcactctttggatggaacct |
56977 |
T |
|
| Q |
201 |
tgaattcgaagattgctagctctttcttgcgtcctccatcacaggttc |
248 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
56976 |
tgaattcgaagattgctagctctttcatgcgtcctccatcacaggttc |
56929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 21879321 - 21879074
Alignment:
| Q |
1 |
tgtggatttgatgaatattgatgttgattttcacggacatatgaaaggtatggtgtcggaagttattgttaatggaacctggaacatacctgcagtaatt |
100 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21879321 |
tgtggagttgatgaatattaatgttgattttcacggacatatgaaaggtatggtgtcggaagttattgttaatggaacctggaacatacctgcagttatt |
21879222 |
T |
|
| Q |
101 |
tcaaattttggggacattaaagagcgcctagatgttgtcgtcatacctcgtacacagctcagggatgtgctggtttggaagcactctttggatggaacct |
200 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||| |||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21879221 |
tcagattttggggacattaaagagagcctagatgctgtcgtcatatctcgtacgcaactcagggatgtgctggtttggaagcactctttggatggagcct |
21879122 |
T |
|
| Q |
201 |
tgaattcgaagattgctagctctttcttgcgtcctccatcacaggttc |
248 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
21879121 |
tgaattcgaagatttctagctctttcatgcgtcctccatcacaggttc |
21879074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 1926124 - 1925881
Alignment:
| Q |
5 |
gatttgatgaatattgatgttgattttcacggacatatgaaaggtatggtgtcggaagttattgttaatggaacctggaacatacctgcagtaatttcaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1926124 |
gatttgatgaatattgatgttgattttcatggacatatgaaaggtatggtgtcggaagttattgttaatggaacctggaacatacctgcagctatttcag |
1926025 |
T |
|
| Q |
105 |
attttggggacattaaagagcgcctagatgttgtcgtcatacctcgtacacagctcagggatgtgctggtttggaagcactctttggatggaaccttgaa |
204 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1926024 |
attttggggacattcaagagcgcctagatgctgtcgtcatacctcgtacacatctcagggatgtgctggtttggaagcactctttggatggagtcttgaa |
1925925 |
T |
|
| Q |
205 |
ttcgaagattgctagctctttcttgcgtcctccatcacaggttc |
248 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1925924 |
ttcgaagaatgctagctctttcatgcgtcctccatcacaggttc |
1925881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 21035 - 20795
Alignment:
| Q |
8 |
ttgatgaatattgatgttgattttcacggacatatgaaaggtatggtgtcggaagttattgttaatggaacctggaacatacctgcagtaatttcaaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||| |
|
|
| T |
21035 |
ttgatgaatattgatgttgattttcatggacatatgaaaggtatggtgtcggaagttattgttaatggtacctggaacatacctgcagctattgcagatt |
20936 |
T |
|
| Q |
108 |
ttggggacattaaagagcgcctagatgttgtcgtcatacctcgtacacagctcagggatgtgctggtttggaagcactctttggatggaaccttgaattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20935 |
ttggggacattaaagagcgcctagatgttgtcgtcttacctcgtactcaactcagggatgtgctggtttggaagcactctttggatggagtcttgaattc |
20836 |
T |
|
| Q |
208 |
gaagattgctagctctttcttgcgtcctccatcacaggttc |
248 |
Q |
| |
|
||| ||||| |||||||| |||||||||| |||||||||| |
|
|
| T |
20835 |
caagcttgctcgctctttcatgcgtcctccttcacaggttc |
20795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 21811774 - 21812014
Alignment:
| Q |
8 |
ttgatgaatattgatgttgattttcacggacatatgaaaggtatggtgtcggaagttattgttaatggaacctggaacatacctgcagtaatttcaaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||| |
|
|
| T |
21811774 |
ttgatgaatattgatgttgattttcatggacatatgaaaggtatggtgtcggaagttattgttaatggtacctggaacatacctgcagctattgcagatt |
21811873 |
T |
|
| Q |
108 |
ttggggacattaaagagcgcctagatgttgtcgtcatacctcgtacacagctcagggatgtgctggtttggaagcactctttggatggaaccttgaattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21811874 |
ttggggacattaaagagcgcctagatgttgtcgtcttacctcgtactcaactcagggatgtgctggtttggaagcactctttggatggagtcttgaattc |
21811973 |
T |
|
| Q |
208 |
gaagattgctagctctttcttgcgtcctccatcacaggttc |
248 |
Q |
| |
|
||| ||||| |||||||| |||||||||| |||||||||| |
|
|
| T |
21811974 |
caagcttgctcgctctttcatgcgtcctccttcacaggttc |
21812014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 7754 - 7557
Alignment:
| Q |
51 |
tggtgtcggaagttattgttaatggaacctggaacatacctgcagtaatttcaaattttggggacattaaagagcgcctagatgttgtcgtcatacctcg |
150 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || || | ||||||| ||||||| |
|
|
| T |
7754 |
tggtgtccgaagttatagttaatggaacctggaacatacctgcagtaatttcagattttggggacattagagagcgtctcgacgctgtcgtcctacctcg |
7655 |
T |
|
| Q |
151 |
tacacagctcagggatgtgctggtttggaagcactctttggatggaaccttgaattcgaagattgctagctctttcttgcgtcctccatcacaggttct |
249 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||| ||||||||| | |||||||||| |
|
|
| T |
7654 |
tacaccgctcatggatgtcctggtttggaagcact-tttggatggaaacttgaattcgaagctagctagctctttcatgcgtcctcaagcacaggttct |
7557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 14625 - 14858
Alignment:
| Q |
1 |
tgtggatttgatgaatattgatgttgattttcacggacatatgaaaggtatggtgtcggaagttattgttaatggaacctggaacatacctgcagtaatt |
100 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| | |||||||||| | ||||||||||||| |||| |||||||||||||| ||| ||| || |
|
|
| T |
14625 |
tgtggatttgatgagtattgatactgattttcacggtcttatgaaaggtttcatgtcggaagttatcgttatcggaacctggaacatgccttcagcgctt |
14724 |
T |
|
| Q |
101 |
tcaaattttggggacattaaagagcgcctagatgttgtcgtcatacctcgtacacagctcagggatgtgctggtttggaagcactctttggatggaacct |
200 |
Q |
| |
|
|| |||||||| |||||| ||||||||| || | ||| ||| |||||||||| | |||| ||||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
14725 |
tccgattttgggaacattagagagcgcctcgaggctgttgtcctacctcgtaccccgctcgtggatgtgctagtttggatgcactctttagatggaacaa |
14824 |
T |
|
| Q |
201 |
tgaattcgaagattgctagctctttcttgcgtcc |
234 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||| |
|
|
| T |
14825 |
tgaacacgaagcttgcaagctctttcttgcgtcc |
14858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 128202 - 128280
Alignment:
| Q |
170 |
ctggtttggaagcactctttggatggaaccttgaattcgaagattgctagctctttcttgcgtcctccatcacaggttc |
248 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| ||| || |||||||||||| |||||||||| |||||||||| |
|
|
| T |
128202 |
ctggtttggatgcactctttggatggagtcttgaattagaaaatggctagctctttcctgcgtcctccttcacaggttc |
128280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 306019 - 306097
Alignment:
| Q |
170 |
ctggtttggaagcactctttggatggaaccttgaattcgaagattgctagctctttcttgcgtcctccatcacaggttc |
248 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| ||| || |||||||||||| |||||||||| |||||||||| |
|
|
| T |
306019 |
ctggtttggatgcactctttggatggagtcttgaattagaaaatggctagctctttcctgcgtcctccttcacaggttc |
306097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University