View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1746_low_15 (Length: 247)
Name: NF1746_low_15
Description: NF1746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1746_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 19370854 - 19370633
Alignment:
| Q |
11 |
caaaggatttagtggtaaagaaaggttgtagcctggtttggaatgatacaaacttatccaagttggttagagctaacatttccggtcggcatattatgtt |
110 |
Q |
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| T |
19370854 |
caaaggatttagtggtaaagaaaggttgtagcctggtttggaatgatacaaacttatccaagttggttagagctaacatttccggtcggcatattatgtt |
19370755 |
T |
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| Q |
111 |
taagcaacttcataacgtcgagcatctgcgcctacatgtggtatgtatatatatttatcaaatttacaaaatactagcaaattacattagtctgttaaat |
210 |
Q |
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| T |
19370754 |
taagcaacttcataacgtggagcatctgcgcctacatgtggtatgtatatatatttatcaaatttacaaaatactagcaaattacattagtctgttaaat |
19370655 |
T |
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| Q |
211 |
taagataatcaatttacccatt |
232 |
Q |
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||||||||||||||||| |||| |
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| T |
19370654 |
taagataatcaatttactcatt |
19370633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 31211211 - 31211312
Alignment:
| Q |
55 |
gatacaaacttatccaagttggttagagctaacatttccggtcggcatattatgtttaagcaacttcataacgtcgagcatctgcgcctacatgtggtat |
154 |
Q |
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||||||| ||||||||| |||||||||||||||||||| ||| ||||||| ||| | || |||||||| || |||||||||||||||||| |||||| |
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| T |
31211211 |
gatacaagcttatccaaattggttagagctaacatttctggtttgcatatttattttgatcagcttcataatgtggagcatctgcgcctacatatggtat |
31211310 |
T |
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| Q |
155 |
gt |
156 |
Q |
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|| |
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| T |
31211311 |
gt |
31211312 |
T |
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