View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1746_low_2 (Length: 491)
Name: NF1746_low_2
Description: NF1746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1746_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 32861131 - 32860727
Alignment:
| Q |
19 |
caaatcacttccatgaagaaatcaaaacagtgttactaacaataaagaatacaaacagcttcaaagaaatggatctcaaatccagaaatcacgcatactc |
118 |
Q |
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| T |
32861131 |
caaatcacttccatgaagaaatcaaaacagtgttactaacaataaagaatacaaacagcttcaaagaaatggatctcaaatccagaaatcacgcatactc |
32861032 |
T |
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| Q |
119 |
accgtcaaaatcagcaaagtgtgtagatcaaggagatcgtaccacggagtcttcggcaaccaccgcggatggaaccgccacatcagccagtggcttcagt |
218 |
Q |
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| T |
32861031 |
accgtcaaaatcagcaaagtgtgtagatcaaggagatcgtaccacggagtcttcggcaaccaccgcggatggaaccgccacatcagccagtggcttcagt |
32860932 |
T |
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| Q |
219 |
tcgagtggatcggtggttagttagggttttgtatttgagactcttttaacctttttcacctttgctctgtgatttgggggaataataagaatttttagat |
318 |
Q |
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| T |
32860931 |
tcgagtggatcggtggttagttagggttttgtatttgag----tgtgaactgttttaacctttgctctgtgatttgggggaataataagaatttttagat |
32860836 |
T |
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| Q |
319 |
agagatgaaaattagaaacgttttgagatttttaatggaaaaaatttgttcaagttgtgaggtggtggggtgccactaccgtcttccagaactagataga |
418 |
Q |
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| T |
32860835 |
agagatg--aattagaaacgttttgagatttttaatggaaaaaatttgttcaagttgtgaggtggtggggtgccactaccgtcttccagaactagataga |
32860738 |
T |
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| Q |
419 |
tattttcttta |
429 |
Q |
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| T |
32860737 |
tattttcttta |
32860727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 468
Target Start/End: Complemental strand, 32860208 - 32860177
Alignment:
| Q |
437 |
atgaccagaattagatattttctactagttca |
468 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
32860208 |
atgaccagaattagatattttctactagttca |
32860177 |
T |
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