View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1746_low_4 (Length: 406)

Name: NF1746_low_4
Description: NF1746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1746_low_4
NF1746_low_4
[»] chr7 (1 HSPs)
chr7 (169-328)||(47363495-47363658)
[»] chr1 (2 HSPs)
chr1 (126-207)||(4816742-4816823)
chr1 (216-293)||(34711561-34711638)
[»] chr3 (5 HSPs)
chr3 (214-398)||(33508409-33508590)
chr3 (126-207)||(25500985-25501066)
chr3 (285-322)||(1930009-1930046)
chr3 (256-328)||(8690337-8690409)
chr3 (256-328)||(9042206-9042278)
[»] chr5 (2 HSPs)
chr5 (126-179)||(41732461-41732514)
chr5 (138-207)||(43391063-43391132)
[»] chr8 (1 HSPs)
chr8 (124-207)||(22642806-22642889)
[»] chr6 (1 HSPs)
chr6 (285-322)||(1069058-1069095)
[»] chr2 (1 HSPs)
chr2 (285-322)||(29370290-29370327)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 169 - 328
Target Start/End: Complemental strand, 47363658 - 47363495
Alignment:
Q  169 aattttgacactcttgctaggtta----tgggcgacacaatttctttataagtttggaaaatgacacaaaaatgatctacaacgagacataatattacca 264  Q
    ||||||||||||||||||||| ||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  47363658 aattttgacactcttgctaggctagctatgggcgacacaatttctttataagtttgaaaaatgacacaaaaatgatctacaacgagacataatattatca 47363559  T
Q  265 aattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 328  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  47363558 aattccaactgattattcggcctatcaactatgctatcagccactagcttagaatctagctcaa 47363495  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 4816823 - 4816742
Alignment:
Q  126 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 207  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||| | ||||||||||| |||||    
T  4816823 aatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataattt 4816742  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 34711561 - 34711638
Alignment:
Q  216 gtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaaattccaactgattattgggcctatcaac 293  Q
    |||||||| ||||||||| | ||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||    
T  34711561 gtttggaacatgacacaatagtgatctacatcgagacataatattactaaattccgactgattattggacctatcaac 34711638  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 398
Target Start/End: Complemental strand, 33508590 - 33508409
Alignment:
Q  214 aagtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaaattccaactgattattgggcctatcaactatgctatcagccactagct 313  Q
    |||||| ||||||||||||| | ||||||||| | | ||||||||||| ||||||   || ||||||||| |||||||| |||| || |  | |||| ||    
T  33508590 aagtttagaaaatgacacaatagtgatctacaccaa-acataatattatcaaattttgaccgattattggacctatcaaatatgatacccactactaact 33508492  T
Q  314 tacaatctaactcaatttagcaccttcgataatctcaattgatcaaaaccatgagatggcatcagacaaccccattgcctatgct 398  Q
    ||||||| | |||||||| ||||||| |||| |  ||||||||| || |||| ||||||| |||  ||| |||||||||||||||    
T  33508491 tacaatcaagctcaattt-gcacctttgatagttccaattgatc-aagccataagatggcgtcacgcaagcccattgcctatgct 33508409  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 25501066 - 25500985
Alignment:
Q  126 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 207  Q
    ||||||||||| |||||||| ||||||| | ||| ||||||||||||||||  | |||||||   |||||||||||||||||    
T  25501066 aatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaactatgggcgacacaattt 25500985  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 1930046 - 1930009
Alignment:
Q  285 cctatcaactatgctatcagccactagcttacaatcta 322  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  1930046 cctatcaactatgctatcaaccactagcttacaatcta 1930009  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 8690409 - 8690337
Alignment:
Q  256 atattaccaaattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 328  Q
    ||||||||||| ||   |||| |||| | ||||||||||||||||||| | |||||||||||||||| |||||    
T  8690409 atattaccaaactcagcctgaatattagtcctatcaactatgctatcaactactagcttacaatctagctcaa 8690337  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 9042278 - 9042206
Alignment:
Q  256 atattaccaaattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 328  Q
    ||||||||||| ||   |||| |||| | ||||||||||||||||||| | |||||||||||||||| |||||    
T  9042278 atattaccaaactcagcctgaatattagtcctatcaactatgctatcaactactagcttacaatctagctcaa 9042206  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 41732514 - 41732461
Alignment:
Q  126 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacac 179  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||| |||||||    
T  41732514 aatacaagatgaaatcaaatcaaaaacttgatgacgagcatgcaatcttgacac 41732461  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 43391063 - 43391132
Alignment:
Q  138 aatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 207  Q
    |||||||||||| || ||||||  |||||||| ||||||||| |||||||   ||||||||||| |||||    
T  43391063 aatcaaatcaaaaacatgatgactagcatacagttttgacacccttgctaaagtatgggcgacataattt 43391132  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 207
Target Start/End: Original strand, 22642806 - 22642889
Alignment:
Q  124 taaatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 207  Q
    |||||||||||||||||||||||||| ||||| |||  ||||||||| || ||| | || |||| |  |||||||||| |||||    
T  22642806 taaatacaagatgaaatcaaatcaaatacttggtgactagcatacaaattcgactccctcgctaagcgatgggcgacataattt 22642889  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 1069058 - 1069095
Alignment:
Q  285 cctatcaactatgctatcagccactagcttacaatcta 322  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  1069058 cctatgaactatgctatcatccactagcttacaatcta 1069095  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 29370327 - 29370290
Alignment:
Q  285 cctatcaactatgctatcagccactagcttacaatcta 322  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  29370327 cctatcaattatgctatcaaccactagcttacaatcta 29370290  T

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