View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1746_low_8 (Length: 318)
Name: NF1746_low_8
Description: NF1746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1746_low_8 |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0265 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 57441 - 57154
Alignment:
| Q |
20 |
ggttagacatcaaatctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaa |
119 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
57441 |
ggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtctaatttattcaa |
57342 |
T |
|
| Q |
120 |
gaggagatatttctcaaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatact |
219 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| ||| | |
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| T |
57341 |
gaggcgatttttctcaaacggtcagccctccatgcgttattttaaatcctcggtttggtcgggtattaaaatacatattggcacggttatgagcaattca |
57242 |
T |
|
| Q |
220 |
ttgtggattgtgggaaatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgatg |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
57241 |
ttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttgatgaatattgatg |
57154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 21879586 - 21879303
Alignment:
| Q |
20 |
ggttagacatcaaatctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaa |
119 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
21879586 |
ggttagacatcaaacatacgtgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacgggaaacacagtggtctaatttattcaa |
21879487 |
T |
|
| Q |
120 |
gaggagatatttctcaaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatact |
219 |
Q |
| |
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|| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||| || |
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|
| T |
21879486 |
aagaagatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcgggtattaaacttcatattggcacggttatgagcaattct |
21879387 |
T |
|
| Q |
220 |
ttgtggattgtgggaaatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatatt |
303 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
21879386 |
ttgtggattgtgggaaatggaaacaatattcatttttggactgataattggctaggtgttcctcttgtggagttgatgaatatt |
21879303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 1926393 - 1926106
Alignment:
| Q |
20 |
ggttagacatcaaatctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaa |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||| |
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|
| T |
1926393 |
ggttagacatcaaaactacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacggcaaacatagtggtctcatttattcaa |
1926294 |
T |
|
| Q |
120 |
gaggagatatttctcaaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatact |
219 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||| || |
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| T |
1926293 |
gaggcgatatttttcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcgggtattaaacttcatattggcacggttatgagcaattct |
1926194 |
T |
|
| Q |
220 |
ttgtggattgtgggaaatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
1926193 |
ttgtggattgtgggaaatggaaacaatattcatttctggactgataattggctaggtgttcctcttgtcgatttgatgaatattgatg |
1926106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 189
Target Start/End: Complemental strand, 18027017 - 18026988
Alignment:
| Q |
160 |
tttaaatcctcggtttggtcaggtattaaa |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18027017 |
tttaaatcctcggtttggtcaggtattaaa |
18026988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 307
Target Start/End: Original strand, 21811517 - 21811789
Alignment:
| Q |
35 |
ctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaagaggagatatttctc |
134 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||||| |||||||||||||| |
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|
| T |
21811517 |
ctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacgggaaacacagtggtctcatcttttcaaaaggagatatttctc |
21811616 |
T |
|
| Q |
135 |
aaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatactttgtggattgtggga |
234 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||| ||| ||||||||||||||||| |
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|
| T |
21811617 |
aaacggtcagccctccatgcactattttaaatcatccgtttggtcgggtattaaacttcatattggcacggttatgagcaattctttgtggattgtggga |
21811716 |
T |
|
| Q |
235 |
aatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgatg |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||| |
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| T |
21811717 |
aatggaaacaatattcatttctggactgataattggctaggtgttcctcttgtagagttgatgaatattgatg |
21811789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 29304645 - 29304491
Alignment:
| Q |
35 |
ctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaagaggagatatttctc |
134 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||| | || || || ||||| |||||||| |||| | | |||||||| |
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|
| T |
29304645 |
ctacgcgtttgattaacgaggctttgattcttaaattttcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgcgttatttctc |
29304546 |
T |
|
| Q |
135 |
aaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaa |
189 |
Q |
| |
|
| | |||||| | | ||||| ||||||||||||||||||||| || |||||| |
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|
| T |
29304545 |
acatggtcagcctagcaagcgctgttttaaatcctcggtttggtcgggaattaaa |
29304491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 41345570 - 41345417
Alignment:
| Q |
35 |
ctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaagaggagatatttctc |
134 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||| | || || || ||||| |||||||| |||| | | |||||||| |
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|
| T |
41345570 |
ctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgcgttatttctc |
41345471 |
T |
|
| Q |
135 |
aaacggtcagtcct-ccgtgcgctattttaaatcctcggtttggtcaggtattaaa |
189 |
Q |
| |
|
| | ||||| ||| | |||||||||||||||||| |||||||| || |||||| |
|
|
| T |
41345470 |
acatggtca--cctagcaagcgctattttaaatcctcagtttggtcgggaattaaa |
41345417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 21307 - 21020
Alignment:
| Q |
20 |
ggttagacatcaaatctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaa |
119 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||| ||||| |
|
|
| T |
21307 |
ggttagacttcatttctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacggtaaacatagtggtctcattttttcaa |
21208 |
T |
|
| Q |
120 |
gaggagatatttctcaaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatact |
219 |
Q |
| |
|
||| ||||||| |||||||||||| ||||| ||| |||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||| ||| || |
|
|
| T |
21207 |
taggtgatatttttcaaacggtcagccctccatgctctattttaaatcttctgtttggtcgggtattaaacttcatattggcacggttatgagcaattct |
21108 |
T |
|
| Q |
220 |
ttgtggattgtgggaaatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
21107 |
ttgtggattgtgggaaatggaaacaatattcatttctggactgataattggctaggtgttcctcttgtagagttgatgaatattgatg |
21020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 14360 - 14646
Alignment:
| Q |
20 |
ggttagacatcaaatctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaa |
119 |
Q |
| |
|
||||||| |||| | ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
14360 |
ggttagatatcagacctacgcgattgattaatgaggctttaattctaaaattatcttgggatttaattgcacaggaaacacagtggtctagtttattcaa |
14459 |
T |
|
| Q |
120 |
gaggagatatttctcaaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatact |
219 |
Q |
| |
|
| | ||||||||||| |||| | ||||| |||||||||||||||||||||||||||| || |||||| | |||||| ||||||| |||| ||| || |
|
|
| T |
14460 |
gcagctttatttctcaaatggtcggccctccatgcgctattttaaatcctcggtttggtcgggcattaaagtatatattggcacggttttgagcaattct |
14559 |
T |
|
| Q |
220 |
ttgtggattgtgggaaatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgat |
306 |
Q |
| |
|
||||||||||| ||| ||||||| |||||| |||| ||||||||||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
14560 |
ttgtggattgttggagatggaaataatattaatttctggactgataattggttagatgatcctcttgtggatttgatgagtattgat |
14646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 189
Target Start/End: Complemental strand, 14675791 - 14675762
Alignment:
| Q |
160 |
tttaaatcctcggtttggtcaggtattaaa |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
14675791 |
tttaaatcctcggtttggtcaggtattaaa |
14675762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 25116 - 25088
Alignment:
| Q |
160 |
tttaaatcctcggtttggtcaggtattaa |
188 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25116 |
tttaaatcctcggtttggtcaggtattaa |
25088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 10137342 - 10137378
Alignment:
| Q |
153 |
gcgctattttaaatcctcggtttggtcaggtattaaa |
189 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
10137342 |
gcgctattttaagtcctcggtttggtcgggtattaaa |
10137378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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