View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17470_low_1 (Length: 343)
Name: NF17470_low_1
Description: NF17470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17470_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 327
Target Start/End: Original strand, 18193206 - 18193521
Alignment:
| Q |
12 |
atcatcaaggaaagaacccacctcagtacttgattatgaagaagcctcaaaacaaaccacagaggatttaaacactcccaccacatcagaaacaaaaact |
111 |
Q |
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| T |
18193206 |
atcatcaaggaaagaacccacctcagtacttgattatgaagaagcctcaaaacaaaccacagaggatttaaacactcccaccacatcagaaacaaaaact |
18193305 |
T |
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| Q |
112 |
tctcaactgaattcaactaaagttgatgaacaaagtgatatttcccaggacaaagctccnnnnnnntttcttccatgtccaagatgcaaaagcgtagaca |
211 |
Q |
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| T |
18193306 |
tctcaactgaattcaactaaagttgatgaacaaagtgatatttcccaggacaaagctccaaacaaatttcttccatgtccaagatgcaaaagcgtagaca |
18193405 |
T |
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| Q |
212 |
caaaattttgttactataataattacaacgccaaccagccccgacacttctgcagaaactgtcagagatattggactgccggaggaaccactagaagtat |
311 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18193406 |
caaaattttgttactacaataattacaacgccaaccagccccgacacttctgcaaaaactgtcagagatattggactgccggaggaaccactagaagtat |
18193505 |
T |
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| Q |
312 |
gcttgtaggtgcaggt |
327 |
Q |
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| T |
18193506 |
gcttgtaggtgcaggt |
18193521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 18187968 - 18188280
Alignment:
| Q |
15 |
atcaaggaaagaacccacctcagtacttgattatgaagaagcctcaaaacaaaccacagaggatttaaacactcccaccacatcagaaacaaaaacttct |
114 |
Q |
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| T |
18187968 |
atcaaggaaagaacccacctcagtacttgattatgaagaagcctcaaaacaaaccacagaggatttaaacattcccaccacatcagaaacagaaacttct |
18188067 |
T |
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| Q |
115 |
caactgaattcaactaaagttgatgaacaaagtgatatttcccaggacaaagctccnnnnnnntttcttccatgtccaagatgcaaaagcgtagacacaa |
214 |
Q |
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| T |
18188068 |
ctacaaaattccactaaaattgatgaacaaagtgatatgtcccaggacaaagctcctaacaaaattcttccatgtccaagatgcaaaagcatggacacaa |
18188167 |
T |
|
| Q |
215 |
aattttgttactataataattacaacgccaaccagccccgacacttctgcagaaactgtcagagatattggactgccggaggaaccactagaagtatgct |
314 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||| |
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| T |
18188168 |
aattttgttactacaataattacaacgccaaccagccccgtcacttctgcaaaaactgtcagagatattggacttccggaggaaccacgagaagcatgct |
18188267 |
T |
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| Q |
315 |
tgtaggtgcaggt |
327 |
Q |
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||||||||||||| |
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| T |
18188268 |
tgtaggtgcaggt |
18188280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 182 - 327
Target Start/End: Original strand, 18230781 - 18230926
Alignment:
| Q |
182 |
ttccatgtccaagatgcaaaagcgtagacacaaaattttgttactataataattacaacgccaaccagccccgacacttctgcagaaactgtcagagata |
281 |
Q |
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|||| |||||||||||||||||| | ||||||||||||||||||||||| || ||||||| ||| ||||||||||||||||||| |||||| ||||| || |
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| T |
18230781 |
ttccctgtccaagatgcaaaagcatggacacaaaattttgttactataacaactacaacgtcaaacagccccgacacttctgcaaaaactgccagaggta |
18230880 |
T |
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| Q |
282 |
ttggactgccggaggaaccactagaagtatgcttgtaggtgcaggt |
327 |
Q |
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||||||| |||||||| |||| |||| |||| |||||||||||||| |
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| T |
18230881 |
ttggacttccggaggagccacgagaaatatgattgtaggtgcaggt |
18230926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 327
Target Start/End: Original strand, 18198155 - 18198300
Alignment:
| Q |
182 |
ttccatgtccaagatgcaaaagcgtagacacaaaattttgttactataataattacaacgccaaccagccccgacacttctgcagaaactgtcagagata |
281 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||| || || ||||||| ||| ||||| ||||||||||||| ||| || || ||||| |
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| T |
18198155 |
ttccatgtccaagatgcaaaagcacggacacaaaattttgctactacaacaactacaacgtcaaacagcctcgacacttctgcaaaaattgccaaagata |
18198254 |
T |
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| Q |
282 |
ttggactgccggaggaaccactagaagtatgcttgtaggtgcaggt |
327 |
Q |
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|||||| | ||||||||||| |||| ||||||| |||| |||||| |
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| T |
18198255 |
ctggacttctggaggaaccacgagaaatatgcttataggggcaggt |
18198300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 2823637 - 2823715
Alignment:
| Q |
223 |
tactataataattacaacgccaaccagccccgacacttctgcagaaactgtcagagatattggactgccggaggaacca |
301 |
Q |
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| T |
2823637 |
tactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaacca |
2823715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 31771790 - 31771895
Alignment:
| Q |
194 |
gatgcaaaagcgtagacacaaaattttgttactataataattacaacgccaaccagccccgacacttctgcagaaactgtcagagatattggactgccgg |
293 |
Q |
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||||||| ||| | ||||| ||||||||||||| || |||||||| | ||||||||| || || || || | || ||||| |||||||||||||| || |
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| T |
31771790 |
gatgcaatagcatggacaccaaattttgttacttcaacaattacaatgtcaaccagcctcgtcatttttgtaagaaatgtcaaagatattggactgcagg |
31771889 |
T |
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| Q |
294 |
aggaac |
299 |
Q |
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|||||| |
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| T |
31771890 |
aggaac |
31771895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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