View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17470_low_6 (Length: 238)
Name: NF17470_low_6
Description: NF17470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17470_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29511428 - 29511205
Alignment:
| Q |
1 |
tcactctataagagagttccaacctttatcctttgtcacagccacacatttcttcttcttccatagcaattcattcttctctaactagccatggctgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29511428 |
tcactctataagagagttccaacctttatcctttgtcacagccacacatttcttcttcttccatagcaattcattcttctctaactagccatggctgatg |
29511329 |
T |
|
| Q |
101 |
aagttattctgctagattactgggcaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaagcatgagtacaaagaagaagattt |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29511328 |
aagtgattctgctagattactgggcaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaagcatgagtacaaagaagaagattt |
29511229 |
T |
|
| Q |
201 |
aaggaacaagagccctttgttgtt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
29511228 |
aaggaacaagagccctttgttgtt |
29511205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 29518537 - 29518323
Alignment:
| Q |
13 |
agagttccaacctttatcctttgtcacagccacacatttcttcttcttccatagcaattcattcttctcta---actagccatggctgatgaagttattc |
109 |
Q |
| |
|
||||||||| ||||| | |||| |||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
29518537 |
agagttccatcctttgtactttctcacagccacacatttcttcttcttccataacaattcattcttttctttctactagccatggctgatgaagtgattc |
29518438 |
T |
|
| Q |
110 |
tgctagattactgggcaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaagcatgagtacaaagaagaagatttaaggaacaa |
209 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
29518437 |
tgctagattactgggtaagtccatttggcatgagggtcagaatagccttagctgaaaagggtatcaaacatgagtacagagaagaagatttaaggaacaa |
29518338 |
T |
|
| Q |
210 |
gagccctttgttgtt |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29518337 |
aagccctttgttgtt |
29518323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 29535605 - 29535459
Alignment:
| Q |
78 |
tctctaactagccatggctgatgaagttattctgctagattactgggcaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaag |
177 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29535605 |
tctctaactagccatggctgataaagtgattctgctagattactgggtaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaag |
29535506 |
T |
|
| Q |
178 |
catgagtacaaagaagaagatttaaggaacaagagccctttgttgtt |
224 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
29535505 |
tatgagtacagagaagaagacttaagcaacaaaagccctttgttgtt |
29535459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 29507531 - 29507387
Alignment:
| Q |
78 |
tctctaactagccatggctgatgaagttattctgctagattactgggcaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaag |
177 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| |||||||| ||||||||||||| ||||| ||| ||||| | |||||||||||||||||||| |
|
|
| T |
29507531 |
tctctaactagtcatggctgatgaagtgattctgcttaattactggccaagtccatttggaatgagactcaaaatagtcttagctgaaaagggtatcaag |
29507432 |
T |
|
| Q |
178 |
catgagtacaaagaagaagatttaaggaacaagagccctttgttg |
222 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
29507431 |
catgagtacagagaagaagacttaagcaacaaaagccctttgttg |
29507387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 29549361 - 29549248
Alignment:
| Q |
89 |
ccatggctgatgaagttattctgctagattactgggcaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaagcatgagtacaa |
188 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||| ||||||||||||| || || || |||||||| || |||||||||||||||||| || | |||| |
|
|
| T |
29549361 |
ccatggccgatgaagttattcttctagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacat |
29549262 |
T |
|
| Q |
189 |
agaagaagatttaa |
202 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
29549261 |
agaagaagaattaa |
29549248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 29505698 - 29505571
Alignment:
| Q |
91 |
atggctgatgaagttattctgctagattactgggcaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaagcatgagtacaaag |
190 |
Q |
| |
|
||||| |||||||| || ||| || ||| |||| ||||||| | ||||||||||||| ||| || |||| ||||||||||||||| ||| | |||| | |
|
|
| T |
29505698 |
atggcagatgaagtaatcctgttaaatttctggccaagtccttatggcatgagggtcctaattgcactagaggaaaagggtatcaagtatgtgaacaagg |
29505599 |
T |
|
| Q |
191 |
aagaagatttaaggaacaagagcccttt |
218 |
Q |
| |
|
|||| ||||| || |||||||| ||||| |
|
|
| T |
29505598 |
aagaggatttcagtaacaagagtccttt |
29505571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University