View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17471_low_2 (Length: 314)
Name: NF17471_low_2
Description: NF17471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17471_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 44547005 - 44547289
Alignment:
| Q |
13 |
aatatccaatggcatatgcttgcagttctcaacaagttcccagaaaattgttaccaaggcattttcctcaacaacccaacatgaacctacatcatggata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44547005 |
aatatccaatggcatatgcttgcagttctcaacaagttcccagaaaattgttaccaaggcattttcctcaacaacccaacatgaacctacatcatggata |
44547104 |
T |
|
| Q |
113 |
tgcaacatgggagcaacaacttccaagtgaatgttatatagctgatcacgcagttggtcttggaagcttgacagcgaataatagtaatgcaatgcttcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44547105 |
tgcaacatgggagcaacaacttccaagtgaatattatatagctgatcacgcagttggtcttggaagcttgacagcgaataatagtaatgcaatgcttcag |
44547204 |
T |
|
| Q |
213 |
caggaagaagatattaataatcaacaacaatcaccaatgcatgttcctcatatgaataatgcagttaatgatggtgtaccgagtg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44547205 |
caggaagaagatattaataatcaacaacaatcaccaatgcatgttcctcatatgaataatgcagttaatgatggtgtatcgagtg |
44547289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University