View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17472_high_2 (Length: 363)
Name: NF17472_high_2
Description: NF17472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17472_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 2782514 - 2782671
Alignment:
| Q |
186 |
acgcaccccaacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtct |
285 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||| |||||||| || |
|
|
| T |
2782514 |
acgcaccccaacaacaccactagagatccacagaaaccacacgcaaacacccgaagcacagcgatctcgtaccaacagcaagctacttaatgtaccgcct |
2782613 |
T |
|
| Q |
286 |
ttcatcgtaaaggagataaaccaccaaccatccagagactggatccgccataattgca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||| |
|
|
| T |
2782614 |
ttcatcgtaaaggagataaaccaccaaccatctaaagactggatccaccacaattgca |
2782671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 2782333 - 2782424
Alignment:
| Q |
5 |
caccacttgaacatcaccaagacagcaaaacaacatcatcaaaccctacaaacaaaccctagaacgcgtagggaaaacatccaaaggccata |
96 |
Q |
| |
|
|||||||||||||||||||||||| || |||| ||||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
2782333 |
caccacttgaacatcaccaagacaacataacatcatcaccaatccctacaaacaaaccccataacgcgtagggaaaacatccaaaggccata |
2782424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 353
Target Start/End: Original strand, 42048555 - 42048714
Alignment:
| Q |
194 |
caacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtctttcatcgt |
293 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||||| ||||||| | ||||| || |||||| |||| |||| ||||| ||||| |||||||||| |
|
|
| T |
42048555 |
caacaacaccaccagagatccatataaaccacacgcgaacacccaacgcacaacgaccccgtacaaacaacaagatacttaccgtaccatctttcatcgc |
42048654 |
T |
|
| Q |
294 |
aaaggagataaaccaccaaccatccagagactggatccgccataattgcacgaccctttg |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| || |||| ||||||||| |
|
|
| T |
42048655 |
gaaggagataaaccaccaaccatccagagactggatccaccacaactgcaagaccctttg |
42048714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 188 - 353
Target Start/End: Original strand, 31180275 - 31180439
Alignment:
| Q |
188 |
gcaccccaacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtcttt |
287 |
Q |
| |
|
||||| || ||||| ||||| |||| |||| |||| || |||||||||| ||||||| | ||||| | ||||| |||||||||| |||||| ||||| |
|
|
| T |
31180275 |
gcaccacaccaacaccaccaaagattcacataaac-actcgcaaacacctaaagcacaattatcccaaaccaacaacaagctacttattgtaccttcttt |
31180373 |
T |
|
| Q |
288 |
catcgtaaaggagataaaccaccaaccatccagagactggatccgccataattgcacgaccctttg |
353 |
Q |
| |
|
| || ||||||| | ||||||||||||||| |||||| |||| ||| || |||||||||||||| |
|
|
| T |
31180374 |
cggcgcgaaggagagacaccaccaaccatccaaagactgaatccaccacaactgcacgaccctttg |
31180439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 40531014 - 40530936
Alignment:
| Q |
275 |
atgtaccgtctttcatcgtaaaggagataaaccaccaaccatccagagactggatccgccataattgcacgaccctttg |
353 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||| | | || ||||||| |||||||||| ||| || |||||||||||||| |
|
|
| T |
40531014 |
atgtaccgtctttcttcgcgaaggagaaaaatctcaaatcatccagggactggatccaccacaactgcacgaccctttg |
40530936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University