View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17472_high_5 (Length: 230)
Name: NF17472_high_5
Description: NF17472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17472_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 35368166 - 35368359
Alignment:
| Q |
22 |
aattgaataaagtagaggtttttaacttaatgattgcgcttacaactctcgtgttgcaatcaatttcttcactaaaagaggaaataaattggtaaaagaa |
121 |
Q |
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| T |
35368166 |
aattgaataaagtagatgtttttaacttaatgattgcgcttacaactctcgtgttgcaatcaatttcttcactaaaagaggaaataaattggtaaaagaa |
35368265 |
T |
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| Q |
122 |
atgatcttttgaataaaataggtgtttcgttacacaattttttgatataattgttgtactgtaccaacatatgtgcattcatgtttacatatat |
215 |
Q |
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| T |
35368266 |
atgatcttttgaataaaataggtgtttcgttacacaaatttttgatataattgttgtactgtaccaacatatgtgcattcatgtttacatatat |
35368359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 10419665 - 10419538
Alignment:
| Q |
79 |
aatcaatttcttcactaaaagaggaaataaattggtaaaagaaatgatcttttgaataaaataggtgtttcgttacacaattttttgatataattgttgt |
178 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||| |
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| T |
10419665 |
aatcaatttcttcactaaaagagaaaataaattggtgaaagaaatgat---------aaaatagatgtttcggtacacaaatttttgatataattgttgt |
10419575 |
T |
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| Q |
179 |
actgtaccaacatatgtgcattcatgtttacatatat |
215 |
Q |
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| T |
10419574 |
actgtaccaacatatgtgcattcatgtttacatatat |
10419538 |
T |
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