View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17472_low_1 (Length: 425)

Name: NF17472_low_1
Description: NF17472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17472_low_1
NF17472_low_1
[»] chr7 (8 HSPs)
chr7 (10-406)||(31215510-31215906)
chr7 (27-82)||(31058594-31058649)
chr7 (12-82)||(31140397-31140467)
chr7 (12-82)||(31153412-31153482)
chr7 (12-82)||(31103038-31103108)
chr7 (285-382)||(31140112-31140209)
chr7 (285-382)||(31153130-31153227)
chr7 (12-73)||(31184130-31184191)
[»] scaffold0400 (2 HSPs)
scaffold0400 (282-325)||(6658-6701)
scaffold0400 (281-338)||(12933-12990)
[»] scaffold0365 (2 HSPs)
scaffold0365 (282-325)||(7302-7345)
scaffold0365 (281-338)||(13576-13633)
[»] chr5 (1 HSPs)
chr5 (30-82)||(37027180-37027232)
[»] chr1 (7 HSPs)
chr1 (281-318)||(15040918-15040955)
chr1 (281-325)||(14532646-14532690)
chr1 (281-325)||(15002274-15002318)
chr1 (281-325)||(15011167-15011211)
chr1 (281-325)||(15017282-15017326)
chr1 (281-325)||(15032625-15032669)
chr1 (281-325)||(15037187-15037231)


Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 406
Target Start/End: Complemental strand, 31215906 - 31215510
Alignment:
Q  10 catcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaagacttcttctgcttgtgcttcattaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31215906 catcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaagacttcttctgcttgtgcttcattaga 31215807  T
Q  110 atctttatccttgttttttgtctttcttgctctccgataaataatatacattgaaattcccaacccacaaaatactagtactagagcacctaagatgaca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31215806 atctttatccttgttttttgtctttcttgctctccgataaataatatacattgaaattcccaacccagaaaatactagtactagagcacctaagatgaca 31215707  T
Q  210 aacaatactagaaggaggatctcgtgtctctttttactgtggctagttgggcaaagcattagaccagtgtgattaccacacaagcctttgttatttttta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31215706 aacaatactagaaggaggatctcgtgtctctttttactgtggctagttgggcaaagcattagaccagtgtgattaccacacaagcctttgttatttttta 31215607  T
Q  310 atgattcaattggagccttgagaaaggcttgattatttggtagcctcccttctaactggttgtttgatatgttgacataggtcaagcttgactgtgc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31215606 atgattcaattggagccttgagaaaggcttgattatttggtagcctcccttctaactggttgtttgatatgttgacataggtcaagcttgactgtgc 31215510  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 31058649 - 31058594
Alignment:
Q  27 gtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 82  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  31058649 gtagcttcaataatattttcaaacatcatttttccatcatgactccaaatggaaaa 31058594  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 31140467 - 31140397
Alignment:
Q  12 tcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 82  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  31140467 tcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatgactccaaatggaaaa 31140397  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 31153482 - 31153412
Alignment:
Q  12 tcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 82  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  31153482 tcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatgactccaaatggaaaa 31153412  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 31103108 - 31103038
Alignment:
Q  12 tcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 82  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||    
T  31103108 tcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatggctccaaatcgaaaa 31103038  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 31140209 - 31140112
Alignment:
Q  285 ccacacaagcctttgttattttttaatgattcaattggagccttgagaaaggcttgattatttggtagcctcccttctaactggttgtttgatatgtt 382  Q
    ||||||||| ||||||||||||| ||||||||||  ||||| |  ||||| ||| |||| |  || |||  |||||||||||| ||||||||||||||    
T  31140209 ccacacaagtctttgttatttttgaatgattcaaacggagcatgaagaaaagctggattgtccggaagcggcccttctaactgattgtttgatatgtt 31140112  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 31153227 - 31153130
Alignment:
Q  285 ccacacaagcctttgttattttttaatgattcaattggagccttgagaaaggcttgattatttggtagcctcccttctaactggttgtttgatatgtt 382  Q
    ||||||||| ||||||||||||| ||||||||||  ||||| |  ||||| ||| |||| |  || |||| |||||||||||| |||| |||||||||    
T  31153227 ccacacaagtctttgttatttttgaatgattcaaacggagcatgaagaaaagctggattgtccggaagccgcccttctaactgattgtctgatatgtt 31153130  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 31184191 - 31184130
Alignment:
Q  12 tcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactcca 73  Q
    ||||||||||| |  ||||||| ||| ||| |||||||| ||||||| ||||||||||||||    
T  31184191 tcatcaaaattctcagtagcttgaataatactttcaaacgtcattttcccatcatgactcca 31184130  T

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Target: scaffold0400 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 6701 - 6658
Alignment:
Q  282 ttaccacacaagcctttgttattttttaatgattcaattggagc 325  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  6701 ttaccacacaagcctttgttatttcttaatgcttcaattggagc 6658  T

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Target: scaffold0400; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 12990 - 12933
Alignment:
Q  281 attaccacacaagcctttgttattttttaatgattcaattggagccttgagaaaggct 338  Q
    ||||||||||||||||||||||||| | | || |||||||||||| || || ||||||    
T  12990 attaccacacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggct 12933  T

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Target: scaffold0365 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 7345 - 7302
Alignment:
Q  282 ttaccacacaagcctttgttattttttaatgattcaattggagc 325  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  7345 ttaccacacaagcctttgttatttcttaatgcttcaattggagc 7302  T

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Target: scaffold0365; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 13633 - 13576
Alignment:
Q  281 attaccacacaagcctttgttattttttaatgattcaattggagccttgagaaaggct 338  Q
    ||||||||||||||||||||||||| | | || |||||||||||| || || ||||||    
T  13633 attaccacacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggct 13576  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 37027232 - 37027180
Alignment:
Q  30 gcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 82  Q
    |||||||| ||||||||| | | |||||||||||||| |||||||||||||||    
T  37027232 gcttcaatgatattttcataaaccatttttccatcataactccatatggaaaa 37027180  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 15040955 - 15040918
Alignment:
Q  281 attaccacacaagcctttgttattttttaatgattcaa 318  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  15040955 attaccacacaagcctttgttatttcttaatgcttcaa 15040918  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 14532646 - 14532690
Alignment:
Q  281 attaccacacaagcctttgttattttttaatgattcaattggagc 325  Q
    ||||||||||||||||||||||||| | | || ||||||||||||    
T  14532646 attaccacacaagcctttgttatttctaagtgcttcaattggagc 14532690  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 15002318 - 15002274
Alignment:
Q  281 attaccacacaagcctttgttattttttaatgattcaattggagc 325  Q
    ||||||||||||||||||||||||| | | || ||||||||||||    
T  15002318 attaccacacaagcctttgttatttctcagtgcttcaattggagc 15002274  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 15011211 - 15011167
Alignment:
Q  281 attaccacacaagcctttgttattttttaatgattcaattggagc 325  Q
    ||||||||| ||||||||||||||| | |||| ||||||||||||    
T  15011211 attaccacataagcctttgttatttgtcaatgcttcaattggagc 15011167  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 15017326 - 15017282
Alignment:
Q  281 attaccacacaagcctttgttattttttaatgattcaattggagc 325  Q
    ||||||||||||||| ||||||||| | |||| ||||||||||||    
T  15017326 attaccacacaagcccttgttatttgtcaatgcttcaattggagc 15017282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 15032669 - 15032625
Alignment:
Q  281 attaccacacaagcctttgttattttttaatgattcaattggagc 325  Q
    ||||||||| ||||||||||||||| | |||| ||||||||||||    
T  15032669 attaccacataagcctttgttatttgtcaatgcttcaattggagc 15032625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 15037231 - 15037187
Alignment:
Q  281 attaccacacaagcctttgttattttttaatgattcaattggagc 325  Q
    ||||||||| ||||||||||||||| | |||| ||||||||||||    
T  15037231 attaccacataagcctttgttatttgtcaatgcttcaattggagc 15037187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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