View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17472_low_3 (Length: 301)
Name: NF17472_low_3
Description: NF17472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17472_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 7764389 - 7764514
Alignment:
| Q |
117 |
gagcctaaatgatttttctaggtttctaaaagtctatcttttaaaacccaagaagaaaaacaatttaacatctgtataaacttaaacctaaatcacaaac |
216 |
Q |
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| T |
7764389 |
gagcctaaatgatttttctaggtttctaaaagtctatcttttaaaacccaagaagaaaaacaatttaacatctgtataaacttaaacctaaatcacaaac |
7764488 |
T |
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| Q |
217 |
aatatttccaaaggatttatcataag |
242 |
Q |
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| T |
7764489 |
aatatttccaaaggatttattataag |
7764514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 7763915 - 7764026
Alignment:
| Q |
1 |
gtcatttaaaatttggaaaatataatatggaaaatgatctactgcaagg-aatagcaaataacatcttatacaaaccagaactttttccatgtgtgtctt |
99 |
Q |
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| T |
7763915 |
gtcatttaaaatttggaaaatataatatcaa------tctactgcaagggaatagcaaataacatc--atacaaaccagaactttttccatgtgtgtctt |
7764006 |
T |
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| Q |
100 |
ccccttgttacgtttacgag |
119 |
Q |
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| T |
7764007 |
ccccttgttacgtttacgag |
7764026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 41441220 - 41441174
Alignment:
| Q |
37 |
atctactgcaaggaatagcaaataacatcttatacaaaccagaactt |
83 |
Q |
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| T |
41441220 |
atctactgcaagatatagcaaataacatcttatacaaaccacaactt |
41441174 |
T |
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