View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17472_low_4 (Length: 276)

Name: NF17472_low_4
Description: NF17472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17472_low_4
NF17472_low_4
[»] chr8 (16 HSPs)
chr8 (13-89)||(30129100-30129176)
chr8 (86-161)||(30129228-30129305)
chr8 (162-213)||(30129337-30129388)
chr8 (214-260)||(14228721-14228767)
chr8 (214-260)||(28623122-28623168)
chr8 (214-260)||(30129429-30129475)
chr8 (230-260)||(1158346-1158376)
chr8 (214-260)||(2597171-2597216)
chr8 (214-260)||(7129547-7129593)
chr8 (214-260)||(21648942-21648988)
chr8 (214-260)||(32185672-32185718)
chr8 (214-260)||(32674243-32674289)
chr8 (214-260)||(37562152-37562198)
chr8 (214-260)||(44380625-44380671)
chr8 (215-260)||(41293732-41293777)
chr8 (232-260)||(7376538-7376566)
[»] chr5 (15 HSPs)
chr5 (214-260)||(39788717-39788763)
chr5 (214-260)||(7144591-7144637)
chr5 (214-258)||(19437271-19437315)
chr5 (214-260)||(8959174-8959220)
chr5 (214-260)||(9594492-9594538)
chr5 (214-260)||(9599739-9599785)
chr5 (214-260)||(26685507-26685553)
chr5 (214-260)||(26955238-26955284)
chr5 (214-260)||(27440493-27440539)
chr5 (214-260)||(30574388-30574434)
chr5 (214-260)||(35814467-35814513)
chr5 (215-260)||(582878-582923)
chr5 (214-258)||(3154656-3154700)
chr5 (214-258)||(28501631-28501675)
chr5 (232-260)||(32379940-32379968)
[»] chr1 (14 HSPs)
chr1 (214-260)||(27352644-27352690)
chr1 (214-261)||(26501309-26501356)
chr1 (218-260)||(5959406-5959448)
chr1 (214-260)||(11097895-11097941)
chr1 (214-260)||(29489370-29489416)
chr1 (214-258)||(43457832-43457876)
chr1 (214-260)||(3919314-3919360)
chr1 (226-260)||(7078511-7078545)
chr1 (217-259)||(35972816-35972858)
chr1 (214-260)||(42256474-42256520)
chr1 (215-260)||(19651425-19651470)
chr1 (215-260)||(30530585-30530630)
chr1 (214-258)||(26585186-26585230)
chr1 (232-260)||(34395930-34395958)
[»] chr2 (6 HSPs)
chr2 (214-255)||(5954499-5954540)
chr2 (214-260)||(9695072-9695118)
chr2 (214-261)||(43621958-43622005)
chr2 (214-260)||(29168739-29168785)
chr2 (214-260)||(36909854-36909900)
chr2 (221-258)||(14954612-14954649)
[»] chr7 (13 HSPs)
chr7 (214-257)||(12141913-12141956)
chr7 (214-260)||(29763844-29763890)
chr7 (214-260)||(33050197-33050243)
chr7 (214-260)||(44175559-44175605)
chr7 (216-260)||(13437214-13437258)
chr7 (213-260)||(44511152-44511199)
chr7 (214-260)||(2347070-2347116)
chr7 (214-260)||(4971304-4971350)
chr7 (214-260)||(19426594-19426640)
chr7 (214-260)||(30864428-30864474)
chr7 (214-260)||(43079643-43079689)
chr7 (232-260)||(18926008-18926036)
chr7 (214-258)||(38978506-38978550)
[»] scaffold0332 (1 HSPs)
scaffold0332 (214-260)||(541-587)
[»] scaffold0011 (1 HSPs)
scaffold0011 (214-260)||(18609-18655)
[»] chr6 (2 HSPs)
chr6 (214-260)||(3339510-3339556)
chr6 (214-260)||(17417246-17417292)
[»] chr4 (13 HSPs)
chr4 (214-260)||(8680955-8681001)
chr4 (214-260)||(34259829-34259875)
chr4 (214-260)||(36444406-36444452)
chr4 (214-260)||(5208338-5208384)
chr4 (214-260)||(8455875-8455921)
chr4 (214-256)||(33484123-33484165)
chr4 (215-261)||(40258220-40258266)
chr4 (214-260)||(47519731-47519777)
chr4 (215-260)||(20632659-20632704)
chr4 (226-259)||(47105937-47105970)
chr4 (214-258)||(3475883-3475927)
chr4 (214-258)||(20056410-20056454)
chr4 (226-258)||(52669622-52669654)
[»] chr3 (13 HSPs)
chr3 (214-260)||(11327122-11327168)
chr3 (214-260)||(27162480-27162526)
chr3 (214-258)||(2482687-2482731)
chr3 (214-258)||(16139308-16139352)
chr3 (218-261)||(27936982-27937025)
chr3 (214-260)||(48405424-48405471)
chr3 (214-260)||(462412-462458)
chr3 (214-260)||(1295346-1295392)
chr3 (214-260)||(8254041-8254087)
chr3 (214-260)||(32931929-32931975)
chr3 (214-260)||(36818970-36819016)
chr3 (33-63)||(45590770-45590800)
chr3 (216-260)||(25959553-25959597)
[»] scaffold0522 (1 HSPs)
scaffold0522 (222-260)||(2515-2553)
[»] scaffold0004 (1 HSPs)
scaffold0004 (226-260)||(249153-249187)
[»] scaffold0003 (1 HSPs)
scaffold0003 (214-260)||(337132-337178)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 30129100 - 30129176
Alignment:
Q  13 aatataacattaaagatccatttgaattgacttttttgaacttatctactaagctacacccttgtatagatgtttga 89  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30129100 aatataacattaaggattcatttgaattgacttttttgaacttatctactaagctacacccttgtatagatgtttga 30129176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 30129228 - 30129305
Alignment:
Q  86 ttgattactc--attcttttctgaaaactcggtgatagattcaatctgttgtttcaccttttatgtcacttcctcttt 161  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30129228 ttgattactcgtattcttttctgaaaactcggtgatagattcaatctgttgtttcaccttttatgtcacttcctcttt 30129305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 30129337 - 30129388
Alignment:
Q  162 aatcacaggggcataaacaatattggaactgaacttcaaatgttgcaccaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30129337 aatcacaggggcataaacaatattggaactgaacttcaaatgttgcaccaac 30129388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 14228721 - 14228767
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  14228721 gtacaactattttgtgataacttttgtacaactttctctctcatact 14228767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 28623168 - 28623122
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||||||||||||||||||||  |||||||||||| |||||||    
T  28623168 gtacaaccattatgtgataactttttgacaactttctctttcatact 28623122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 30129429 - 30129475
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  30129429 gtacaaccattatttgacaacttttgaacaactttctctcgcatact 30129475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 260
Target Start/End: Complemental strand, 1158376 - 1158346
Alignment:
Q  230 ataacttttgaacaactttctctctcatact 260  Q
    |||||||||||||||||||||||||||||||    
T  1158376 ataacttttgaacaactttctctctcatact 1158346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 2597216 - 2597171
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  2597216 gtacaaccattatgtgataatttttggacaac-ttctctctcatact 2597171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 7129547 - 7129593
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||| ||||||||||||| ||||||    
T  7129547 gtacaaccattttgtgacaacttttggacaactttctctcacatact 7129593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 21648988 - 21648942
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | ||||| ||||||| |||||||||||||||||||||    
T  21648988 gtacaaccaatttgtgacaactttttaacaactttctctctcatact 21648942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 32185718 - 32185672
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | ||||| |||||||| ||||||||||||||||||||    
T  32185718 gtacaaccaatttgtgacaacttttgtacaactttctctctcatact 32185672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 32674289 - 32674243
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||  |||||||||| ||||||||||||||||||||    
T  32674289 gtacaaccattttggtataacttttgtacaactttctctctcatact 32674243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 37562198 - 37562152
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||| ||||||||| |||||||  ||||||||||||||||||||    
T  37562198 gtacaactattatgtgacaacttttagacaactttctctctcatact 37562152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 44380671 - 44380625
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| ||| ||| |||||||||||||||||||||    
T  44380671 gtacaaccattttgtgacaacctttaaacaactttctctctcatact 44380625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 41293777 - 41293732
Alignment:
Q  215 tacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||| | ||||| |||||||| ||||||||||||||||||||    
T  41293777 tacaaccaatttgtgacaacttttgtacaactttctctctcatact 41293732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 7376538 - 7376566
Alignment:
Q  232 aacttttgaacaactttctctctcatact 260  Q
    |||||||||||||||||||||||||||||    
T  7376538 aacttttgaacaactttctctctcatact 7376566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 39788763 - 39788717
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  39788763 gtacaaccattatgtgacaacttttggacaactttctctctcatact 39788717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 7144591 - 7144637
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||||    
T  7144591 gtacaaccattttatgataacttttaaacaactttctctctcatact 7144637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 19437271 - 19437315
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcata 258  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||    
T  19437271 gtacaaccattttgtgataacctttaaacaactttctctctcata 19437315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 8959174 - 8959220
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||| ||||||||| |||||||| |||||| |||||||||||||    
T  8959174 gtacaactattatgtgacaacttttggacaactgtctctctcatact 8959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 9594492 - 9594538
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | ||||| |||||||| ||||||||||||||||||||    
T  9594492 gtacaaccaatttgtgacaacttttgtacaactttctctctcatact 9594538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 9599785 - 9599739
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | ||||| |||||||| ||||||||||||||||||||    
T  9599785 gtacaaccaatttgtgacaacttttgtacaactttctctctcatact 9599739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 26685553 - 26685507
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||||| || |||||||||||||||    
T  26685553 gtacaaccattttgtgacaacttttgaataattttctctctcatact 26685507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 26955284 - 26955238
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||||| || |||||||||||||||    
T  26955284 gtacaaccattttgtgacaacttttgaataattttctctctcatact 26955238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 27440493 - 27440539
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||| |||| ||||| ||||||||||||| |||||||||||||||    
T  27440493 gtacaatcattttgtgacaacttttgaacaattttctctctcatact 27440539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 30574434 - 30574388
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | ||||| |||||||| ||||||||||||||||||||    
T  30574434 gtacaaccaatttgtgacaacttttgtacaactttctctctcatact 30574388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 35814467 - 35814513
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| |||||||||||| | |||||||||| |||||||||    
T  35814467 gtacaaccattttgtgataactttggtacaactttctttctcatact 35814513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 582923 - 582878
Alignment:
Q  215 tacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||| ||| ||||||||||||| ||||| |||||||||||||||    
T  582923 tacaactattttgtgataacttttaaacaattttctctctcatact 582878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 3154700 - 3154656
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcata 258  Q
    ||||||| ||| | |||||||||||| ||||||||||||||||||    
T  3154700 gtacaactattttatgataacttttgtacaactttctctctcata 3154656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 28501631 - 28501675
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcata 258  Q
    ||||||||||| ||||| || ||||| ||||||||||||||||||    
T  28501631 gtacaaccattttgtgacaatttttgtacaactttctctctcata 28501675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 32379968 - 32379940
Alignment:
Q  232 aacttttgaacaactttctctctcatact 260  Q
    |||||||||||||||||||||||||||||    
T  32379968 aacttttgaacaactttctctctcatact 32379940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 27352644 - 27352690
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  27352644 gtacaaccattttgtgataacttttggacaactttctctctcatact 27352690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 26501309 - 26501356
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatactt 261  Q
    ||||||||||| ||| |||||||||| |||||||||||||||||||||    
T  26501309 gtacaaccattttgtaataacttttggacaactttctctctcatactt 26501356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 5959406 - 5959448
Alignment:
Q  218 aaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  5959406 aaccattatgtgacaacttttggacaactttctctctcatact 5959448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 11097941 - 11097895
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  11097941 gtacatccattttgtgacaacttttgaacaactttctctctcatact 11097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 29489416 - 29489370
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| |||||||||||| | ||||||||||||||||||||    
T  29489416 gtacaaccattttgtgataactttggtacaactttctctctcatact 29489370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 43457876 - 43457832
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcata 258  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||    
T  43457876 gtacaaccattttgcgataacttttggacaactttctctctcata 43457832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 3919314 - 3919360
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||| |||| ||||| ||||||||||||||||||||    
T  3919314 gtacaaccattttgttataatttttggacaactttctctctcatact 3919360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 7078545 - 7078511
Alignment:
Q  226 tgtgataacttttgaacaactttctctctcatact 260  Q
    ||||| |||||||||||||||||||||||||||||    
T  7078545 tgtgacaacttttgaacaactttctctctcatact 7078511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 35972858 - 35972816
Alignment:
Q  217 caaccattatgtgataacttttgaacaactttctctctcatac 259  Q
    |||||||| ||||| |||||||| |||||||||||||||||||    
T  35972858 caaccattttgtgacaacttttgtacaactttctctctcatac 35972816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 42256474 - 42256520
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||||||    
T  42256474 gtacaaccattttgtgacaactttggtacaactttctctctcatact 42256520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 19651425 - 19651470
Alignment:
Q  215 tacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||||| ||||| |||||||| | ||||||||||||||||||    
T  19651425 tacaaccattttgtgacaacttttgtataactttctctctcatact 19651470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 30530630 - 30530585
Alignment:
Q  215 tacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||    
T  30530630 tacaaccattttgtgacaacttttagacaactttctctctcatact 30530585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 26585230 - 26585186
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcata 258  Q
    ||||||| ||| |||||||||||||| |||||||| |||||||||    
T  26585230 gtacaactattttgtgataacttttgtacaactttttctctcata 26585186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 34395958 - 34395930
Alignment:
Q  232 aacttttgaacaactttctctctcatact 260  Q
    |||||||||||||||||||||||||||||    
T  34395958 aacttttgaacaactttctctctcatact 34395930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 5954540 - 5954499
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctc 255  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  5954540 gtacaaccattatgtgataacttttggacaactttctctctc 5954499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 9695118 - 9695072
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  9695118 gtacaaccattatgagataatttttggacaactttctctctcatact 9695072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 43622005 - 43621958
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatactt 261  Q
    ||||||| ||| | ||| ||||||||||||||||||||||||||||||    
T  43622005 gtacaactattttatgacaacttttgaacaactttctctctcatactt 43621958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 29168739 - 29168785
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| | ||| |||||||| ||||||||||||||||||||    
T  29168739 gtacaaccattttttgacaacttttgcacaactttctctctcatact 29168785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 36909900 - 36909854
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||| ||||||||||||| ||||||    
T  36909900 gtacaaccattttgtgacaacttttggacaactttctctcacatact 36909854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 14954649 - 14954612
Alignment:
Q  221 cattatgtgataacttttgaacaactttctctctcata 258  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  14954649 cattttgtgacaacttttgaacaactttctctctcata 14954612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 12141913 - 12141956
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcat 257  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  12141913 gtacaaccattttgtgataacttttgaacaactttttctctcat 12141956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 29763844 - 29763890
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||||    
T  29763844 gtacaaccattttgtgataacttttgtacaactttctttctcatact 29763890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 33050197 - 33050243
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  33050197 gtacaaccattttgtgacaacttttgtacaactttctctctcatact 33050243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 44175559 - 44175605
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||    
T  44175559 gtacaatcattttgtgataacttttgtacaactttctctctcatact 44175605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 13437214 - 13437258
Alignment:
Q  216 acaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||||    
T  13437214 acaaccattttgtgacaacttttgaacaactttttctctcatact 13437258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 44511152 - 44511199
Alignment:
Q  213 cgtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||||||| ||||| |||||||| |||||||||||| |||||||    
T  44511152 cgtacaaccattttgtgacaacttttgtacaactttctctttcatact 44511199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 2347116 - 2347070
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||||||    
T  2347116 gtacaaccattttgtgacaactttggtacaactttctctctcatact 2347070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 4971304 - 4971350
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||  ||||||||||||||||||||    
T  4971304 gtacaaccattttgtgacaacttttatacaactttctctctcatact 4971350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 19426594 - 19426640
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||  ||||||||||||||||||||    
T  19426594 gtacaaccattttgtgacaactttttgacaactttctctctcatact 19426640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 30864474 - 30864428
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | ||||| |||||||| ||||||||||||||||||||    
T  30864474 gtacaaccaatttgtgacaacttttgtacaactttctctctcatact 30864428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 43079689 - 43079643
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | |||||||| ||||| ||||||||||||||||||||    
T  43079689 gtacaaccactttgtgataatttttggacaactttctctctcatact 43079643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 18926036 - 18926008
Alignment:
Q  232 aacttttgaacaactttctctctcatact 260  Q
    |||||||||||||||||||||||||||||    
T  18926036 aacttttgaacaactttctctctcatact 18926008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 38978506 - 38978550
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcata 258  Q
    ||||||||||| | |||||||||||| |||||||||||| |||||    
T  38978506 gtacaaccattctatgataacttttgtacaactttctctttcata 38978550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 541 - 587
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||    
T  541 gtacaaccattatgtgacaactttgggacaactttctctctcatact 587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 18609 - 18655
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||||    
T  18609 gtacaaccaatttgtgataacttttgtacaactttctctctcatact 18655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 3339556 - 3339510
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  3339556 gtacaaccattttgtgacaacttttgtacaactttctctctcatact 3339510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 17417292 - 17417246
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  17417292 gtacaatcattatgtgacaatttttggacaactttctctctcatact 17417246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 8680955 - 8681001
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||    
T  8680955 gtacaaccattatgtgatattttttggacaactttctctctcatact 8681001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 34259829 - 34259875
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||||    
T  34259829 gtacaaccattttgtgacaactgttgaacaactttctctctcatact 34259875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 36444452 - 36444406
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||||    
T  36444452 gtacaaccattttatgataactttttaacaactttctctctcatact 36444406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 5208384 - 5208338
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | ||||| |||||||| ||||||||||||||||||||    
T  5208384 gtacaaccaatttgtgacaacttttgtacaactttctctctcatact 5208338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 8455875 - 8455921
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||| ||| ||||| ||||||||||||||||||||||| |||||    
T  8455875 gtacaactattttgtgacaacttttgaacaactttctctctaatact 8455921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 33484165 - 33484123
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctca 256  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||    
T  33484165 gtacaaccattttgtgataatttttggacaactttctctctca 33484123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 40258220 - 40258266
Alignment:
Q  215 tacaaccattatgtgataacttttgaacaactttctctctcatactt 261  Q
    |||||||||| | |||||| ||||||| |||||||||||||||||||    
T  40258220 tacaaccattttatgataatttttgaataactttctctctcatactt 40258266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 47519777 - 47519731
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||| ||||| ||| | |||||||||||||||||||||||||||||    
T  47519777 gtacatccattttgtaacaacttttgaacaactttctctctcatact 47519731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 20632704 - 20632659
Alignment:
Q  215 tacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||||| | |||||||||||| | ||||||||||||||||||    
T  20632704 tacaaccattttttgataacttttgcataactttctctctcatact 20632659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 47105937 - 47105970
Alignment:
Q  226 tgtgataacttttgaacaactttctctctcatac 259  Q
    |||||||||||||| |||||||||||||||||||    
T  47105937 tgtgataacttttgtacaactttctctctcatac 47105970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 3475883 - 3475927
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcata 258  Q
    ||||||||||| | ||| |||||||| ||||||||||||||||||    
T  3475883 gtacaaccattttatgacaacttttgtacaactttctctctcata 3475927  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 20056410 - 20056454
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcata 258  Q
    ||||||| ||||||| |||| ||||| ||||||||||||||||||    
T  20056410 gtacaactattatgttataatttttggacaactttctctctcata 20056454  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 52669654 - 52669622
Alignment:
Q  226 tgtgataacttttgaacaactttctctctcata 258  Q
    |||||||||||||| ||||||||||||||||||    
T  52669654 tgtgataacttttgtacaactttctctctcata 52669622  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 11327122 - 11327168
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  11327122 gtacaaccattttgtgacaacttttgtacaactttctctctcatact 11327168  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 27162526 - 27162480
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||||    
T  27162526 gtacaaccattttgtaacaacttttgaacaactttctctctcatact 27162480  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 2482731 - 2482687
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcata 258  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||    
T  2482731 gtacatccattttgtgacaacttttgaacaactttctctctcata 2482687  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 16139352 - 16139308
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcata 258  Q
    ||||||||||| | ||||||||||||||||| |||||||||||||    
T  16139352 gtacaaccattttatgataacttttgaacaattttctctctcata 16139308  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 27936982 - 27937025
Alignment:
Q  218 aaccattatgtgataacttttgaacaactttctctctcatactt 261  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||    
T  27936982 aaccattttgtgacaacttttgaataactttctctctcatactt 27937025  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 48405424 - 48405471
Alignment:
Q  214 gtacaaccattatgtgataacttttg-aacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||| |||||||||||||||||||||    
T  48405424 gtacaaccattttgtgacaacttttgtaacaactttctctctcatact 48405471  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 462458 - 462412
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||||  ||||||||||||||||||||    
T  462458 gtacaaccattttgtgacaacttttagacaactttctctctcatact 462412  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 1295346 - 1295392
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||| ||| |||||||||||||| |||||||| |||||||||||    
T  1295346 gtacaactattttgtgataacttttggacaactttttctctcatact 1295392  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 8254041 - 8254087
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||||||    
T  8254041 gtacaaccattttgtgacaactttggtacaactttctctctcatact 8254087  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 32931975 - 32931929
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | ||||| |||||||| ||||||||||||||||||||    
T  32931975 gtacaaccaatttgtgacaacttttgtacaactttctctctcatact 32931929  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 36818970 - 36819016
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||| | ||||| |||||||| ||||||||||||||||||||    
T  36818970 gtacaaccaatttgtgacaacttttgtacaactttctctctcatact 36819016  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 45590800 - 45590770
Alignment:
Q  33 tttgaattgacttttttgaacttatctacta 63  Q
    |||||||||||||||||||||||||||||||    
T  45590800 tttgaattgacttttttgaacttatctacta 45590770  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 25959597 - 25959553
Alignment:
Q  216 acaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||| | |||||||||||||  ||||||||||||||||||||    
T  25959597 acaaccactttgtgataacttttagacaactttctctctcatact 25959553  T

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Target: scaffold0522 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 2553 - 2515
Alignment:
Q  222 attatgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  2553 attatgtgataatttttggacaactttctctctcatact 2515  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 249187 - 249153
Alignment:
Q  226 tgtgataacttttgaacaactttctctctcatact 260  Q
    |||||||||||||| ||||||||||||||||||||    
T  249187 tgtgataacttttgtacaactttctctctcatact 249153  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 337132 - 337178
Alignment:
Q  214 gtacaaccattatgtgataacttttgaacaactttctctctcatact 260  Q
    ||||||||||| | ||| |||||||||| ||||||||||||||||||    
T  337132 gtacaaccattttctgacaacttttgaataactttctctctcatact 337178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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