View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_high_18 (Length: 394)
Name: NF17473_high_18
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 388639 - 389014
Alignment:
| Q |
1 |
ttgatggtgattatgataatgatgagtttttgttgtgtctggaacaccgcatcttggtgtgatcatttgagaaactgtgttcgaatcgagtttaccggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
388639 |
ttgatggtgattatgataatgatgagtttttgttgtgtctggaacaccgcatcttggtgtgatcatttgagaaactgtattcgaatcgagtttaccggtt |
388738 |
T |
|
| Q |
101 |
acttggagtccaagatttctttggtatttgatgatagctgattcaaaattcgaatcaaatttgtcgctgaatgtgtcattgtttttaatgtacccgaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388739 |
acttggagtccaagatttctttggtatttgatgatagctgattcaaaattcgaatcaaatttgtcgctgaatgtgtcattgtttttaatgtacccgaaac |
388838 |
T |
|
| Q |
201 |
gagataggtatcttttgaactgtgatattcctgtgatgttgttgcctctgacagaattggtgaagctatgaatgtcatgatttgtgatggatattttgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
388839 |
gagataggtatcttttgaactgtgatattcctgtgatgttgttgcctctgacagcattggtgaagctatgaatgtcatgatttgagatggatattttgga |
388938 |
T |
|
| Q |
301 |
agcaatgtgtgaagatgatgataatgtgaggagaagagtagtgaagagaaatgtgaaggagtatctgagtgaaagg |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388939 |
agcaatgtgtgaagatgatgataatgtgaggagaagagtagtgaagagaaatgtgaaggagtatctgagtgaaagg |
389014 |
T |
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