View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17473_high_2 (Length: 652)
Name: NF17473_high_2
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Original strand, 35406511 - 35406935
Alignment:
| Q |
19 |
gtctgagacgtaaactatatggtaaaaagtttttacttgtgttagatgatagtgtaaaatggattgagttgacatatttgataaaagttagcacattggg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35406511 |
gtctgagacgtaaactatatggtaaaaagtttttactagtgttagatgatagtgtaaaatggattgagttgacatatttgataaaagttagcacattggg |
35406610 |
T |
|
| Q |
119 |
aagcaagatcatggcgacaatatgcagcaattcaattgcattgatgatgggcattgttccgtcctatgttttaaaaagcctttctatagaaaattgctaa |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35406611 |
aagcaagatcatggcgacaaaatgcagcaattcaattgcattgatgatgggcattgttccgtcctatgttttaaaaagcctttctatagaaaattgctaa |
35406710 |
T |
|
| Q |
219 |
tctctgtttgagaaatgggtattcaaggaagacaaagaagacaaacctccaaatctagttcaaagtacatgatttggttcatgatatatcttgctcgcta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
35406711 |
tctctgtttgagaaatgggtattcaaggaagacgaagaagacaaacctccaaatctagttcaaagtacatgatttggtgcatgatatatcttgctctcta |
35406810 |
T |
|
| Q |
319 |
tgttgcaaaagaggagtttgtagcagttaaatcccattttcctagattacctgagcaagtaaagcatttatcaattgttgaaaatgtttcaatttgccat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35406811 |
tgttgcaaaagaggagtttgtagcagttaaatcccattttcttagattacctgagcaagtaaagcatttatcaattgttgaaaatgtttcaatttcccat |
35406910 |
T |
|
| Q |
419 |
tctttgttccccaagtcaaggagtg |
443 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35406911 |
tctttgttccccaagtcaaggagtg |
35406935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 436 - 638
Target Start/End: Original strand, 35406960 - 35407162
Alignment:
| Q |
436 |
aaggagtgagtcttgatagtgaaactcttttaaatacatgcaagttttagatttaagaaattctctgtttgagactctacttaattgatcaattgctaaa |
535 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35406960 |
aaggagtgagtcttgatagtgaaacttttttaaatacatgcaagttttagatttaagaaattctatgtttgagactctacttaattgatcaattgctaaa |
35407059 |
T |
|
| Q |
536 |
ttagaatacttatgtgcaagnnnnnnnactcaatggatgcatggattggatattgaaacactgcctaaatggttaggcaagctgatcagccttcgagaat |
635 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35407060 |
ttagaatacttatgtggaagtttgtttactcaatggatgcatggattggatattgaaacactgcctaaatggttaggcaagctgatcagcctttgagaat |
35407159 |
T |
|
| Q |
636 |
tat |
638 |
Q |
| |
|
||| |
|
|
| T |
35407160 |
tat |
35407162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 18118041 - 18117767
Alignment:
| Q |
19 |
gtctgagacgtaaactatatggtaaaaagtttttacttgtgttagatgata---------------gtgtaaaatggattgagttgacatatttgataaa |
103 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||| || |
|
|
| T |
18118041 |
gtctgagacgtaaactttatggtaaaaggtttttacttgtgttagatgatatatggaatgatgattgtgtaaaatggatcgagttgaaagatttgattaa |
18117942 |
T |
|
| Q |
104 |
agttagcacattgggaagcaagatcatggcgacaatatgcagcaattcaattgcattgatgatgggcattgttccgtcctatgttttaaaaagcctttct |
203 |
Q |
| |
|
|||| ||||| | |||||||| |||||||||||| | ||||||| |||||||||| ||||||||| | |||||| ||||||||||||||| |||||||| |
|
|
| T |
18117941 |
agttggcacagtaggaagcaaagtcatggcgacaacacgcagcaactcaattgcatcgatgatgggtactgttccctcctatgttttaaaaggcctttct |
18117842 |
T |
|
| Q |
204 |
atagaaaattgctaatctctgtttgagaaatgggtattcaaggaagacaaagaagacaaacctccaaatctagtt |
278 |
Q |
| |
|
|| ||||| || | |||| |||||| |||||||| ||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
18117841 |
attgaaaactgtttatctttgtttgtgaaatgggcattcaaggaaggcgaagaagacaaatatccaaatctagtt |
18117767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 275 - 443
Target Start/End: Complemental strand, 18117366 - 18117202
Alignment:
| Q |
275 |
agttcaaagtacatgatttggttcatgatatatcttgctcgctatgttgcaaaagaggagtttgtagcagttaaatcccattttcctagattacctgagc |
374 |
Q |
| |
|
||||||||||||| |||||||| |||||| |||||| ||||||||||||| |||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
18117366 |
agttcaaagtacacgatttggtacatgat----cttgctttctatgttgcaaaaaaggagtttgtagtggttaaatcccacattcttagattacctgagc |
18117271 |
T |
|
| Q |
375 |
aagtaaagcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaaggagtg |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18117270 |
gagtaaagcatttatcaattgttgaaaatgtttcaatttgcgattctttgttccccaagtcaaggagtg |
18117202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 588 - 633
Target Start/End: Complemental strand, 18132985 - 18132940
Alignment:
| Q |
588 |
ttgaaacactgcctaaatggttaggcaagctgatcagccttcgaga |
633 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18132985 |
ttgaaacactgcctaaagggttaggcaagctgatcagccttcgaga |
18132940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 18124932 - 18124860
Alignment:
| Q |
366 |
tacctgagcaagtaaagcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaag |
438 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| || ||||| |||| |||||||||||||| |
|
|
| T |
18124932 |
tacctgagcaagtgcgacatttatcaattgttgaaaatgattcacttggccatactttattccccaagtcaag |
18124860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 629
Target Start/End: Complemental strand, 18116943 - 18116902
Alignment:
| Q |
588 |
ttgaaacactgcctaaatggttaggcaagctgatcagccttc |
629 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
18116943 |
ttgaaacattgcctaaagggttaggcaagctgatcagccttc |
18116902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 541
Target Start/End: Complemental strand, 18117124 - 18117053
Alignment:
| Q |
467 |
aaatacatgcaagttttagatttaagaaattctctgtttgagactctacttaattgatcaattgctaaattagaa |
541 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| | | |||||||||| |||| |||||||||| ||||||| |
|
|
| T |
18117124 |
aaatacttgcgagttttagatttaagaaattcttcgatcgagactctacctaat---tcaattgctacattagaa |
18117053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 36223683 - 36223736
Alignment:
| Q |
382 |
gcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtc |
435 |
Q |
| |
|
|||| |||||||||||||||||| |||| || ||||| ||||||||||||||| |
|
|
| T |
36223683 |
gcatatatcaattgttgaaaatggttcacttggccatgatttgttccccaagtc |
36223736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University