View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_high_20 (Length: 384)
Name: NF17473_high_20
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 36323374 - 36322991
Alignment:
| Q |
1 |
cttgtaattgataagttttaaataggctaaagaatttaaaatattttgcggtcaggtatttgaggaaaatttttattcatatgcatttacagaatcatta |
100 |
Q |
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| T |
36323374 |
cttgtaattgataagttttaaataggctaaagaatttaaaatattttgcggtcaggtatttgaggaaaatttttattcatatgcatttacagaatcatta |
36323275 |
T |
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| Q |
101 |
gttaactacaatggctcgctcgatctttagaaaaaatttacacatattcgtataacaaattatgaaaatgatatgcatattttaaccgaggtttgccatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
36323274 |
gttaactacaatggctcgctcgatctttagaaaaaatttacacatattcgtattacaaattatgaaaatgatatgcatgtttaaaccgaggtttgccatt |
36323175 |
T |
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| Q |
201 |
aatctttagctacacatacacacatgagttttgttttttgttaacaatgtttgtccatgttgcttctcccaagggtccnnnnnnnggggaggtcaacctt |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36323174 |
aatctttagctacacatacacacatgaattttgttttttgttaacaatgtttgtccatgttgcttctcccaagggtcctttttttggggaggtcaacctt |
36323075 |
T |
|
| Q |
301 |
ctcctaagcttaaaatgagctcaaccatcgatcctaatgggagctccgccgccgggcgaccatcatcaaccaccaccaatataa |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36323074 |
ctcctaagcttaaaatgagctcaaccatcgatcctaatgggagctccgctgccgggcgaccatcatcaaccaccaccaatataa |
36322991 |
T |
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