View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17473_high_33 (Length: 274)
Name: NF17473_high_33
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_high_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 42045499 - 42045252
Alignment:
| Q |
14 |
atatggagcatcacacattaaccacctttaaattcatttttaaatacagtttgcaatttcaaaaaacacatataatgagtaannnnnnnnn----ataat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42045499 |
atatggagcatcacacattaaccacctttaaattcatttttaaatacagtt-gcaatttcaaaaaacacatataatgagtaatttttgtttttttataat |
42045401 |
T |
|
| Q |
110 |
tttaaaatgttgatgtgacaattatttgatgacatgattgtatgtaacaatgacaaaagactaacgtgatattgataagtcaaattatgcatatacattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42045400 |
tttaaaatgttgatgtgacaattatttgatgacatgattgtatgtaacaatgacaaaagactaacgtgatattgataagttgaattatgcatatacattc |
42045301 |
T |
|
| Q |
210 |
atgttaaatcatattattttaacatcgtatgtatatgttagttgataga |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
42045300 |
atgttaaatcatattattttaacatcgtaagtatatgttagttggtaga |
42045252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University