View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17473_high_4 (Length: 554)
Name: NF17473_high_4
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 5020034 - 5019487
Alignment:
| Q |
1 |
caacttttcacagatcaattttctagatcagtattgctgatgtgttcatcacctcgtactgtt-gtgcacaatagatgcataatttaggctttatgcttc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5020034 |
caacttttcacagatcaattttctagatcagtattgctgatgtgttcatcacctcatactgtttgtgcacaatagatgcataatttaggctttatgcttc |
5019935 |
T |
|
| Q |
100 |
ctaaatcctaattaaagaaccaaaaaagagaagcataccctagtagtgtctgcctcaaacgtaaacatagttacaacccacagtactgacta-------g |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
5019934 |
ctaaatcctaattaaagaaccaaaaaagagaagcataccctagtagtgtctgcctcaaacgtaaagatagttacaacccacagtactgactactgactag |
5019835 |
T |
|
| Q |
193 |
gacagaatcgatctttttatctcacaatcatagctcaaaattcatgaactagcttgctttaatcgaaacaagtcactgattttattctaaatt-gcaaag |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5019834 |
gacagaatcgatctttttatctcacaatcatagctcaaaattcatgaactagcttgctttaatcgaaacaagtcactgattttattctaaatttgcaaag |
5019735 |
T |
|
| Q |
292 |
gtcaaaagcaactttgcttcattaaaatctttcagaaaaatagtaaagtaacaataatgactcaatttaatttgtagcatatttggcaacaagatgtact |
391 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5019734 |
gtcaaaagcaactttgcttcatgaaaatctttcagaaaaatagtaaagtaacaataatgactcaatttaatttgtagcatatttggcaacaagatgtact |
5019635 |
T |
|
| Q |
392 |
tgctagtggtatgtataaagcaaaaagcaaaagagcttccaaacatgaatattccactttaatgtaaattcagatatgggtgtactgtaagaaatttaca |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5019634 |
tgctagtggtatgtataaagcaaaaagcaaaagagcttccaaacatgaatattccactttaatgtaaattcagatatgggtgtcctgtaagaaatttaca |
5019535 |
T |
|
| Q |
492 |
aacacgagtattgagaatcttatttgtgaatttcatcactgtaaaatt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5019534 |
aacacgagtattgagaatcttatttgtgaatttcatcactgtaaaatt |
5019487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University