View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_high_41 (Length: 237)
Name: NF17473_high_41
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_high_41 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 1373313 - 1373094
Alignment:
| Q |
18 |
tttgatcaagggaagaataactgaatgagtattctaatctatatattatagttgacttgatagcttgaaaataaagtcttatttggaaagatttcaacct |
117 |
Q |
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| T |
1373313 |
tttgaacaagggaagaataactgaatgagtattctaatctatatattatagttgacttgatagcttgaaaataaagtcttatttggaaagatttcaacct |
1373214 |
T |
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| Q |
118 |
atactgaaattgctctttatattatttgataaatggtatttctttcaactcatatcagttgtaggcattgtaacatcagtgagaagtgcacgccaaagat |
217 |
Q |
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| T |
1373213 |
atactgaaattgatctttatattatttgataaatggtctttctttcaactcatatcagttgtaggcaatgtaacatcagtgagaagtgcacgccaatgat |
1373114 |
T |
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| Q |
218 |
gcggcgtggacctgaagggc |
237 |
Q |
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| T |
1373113 |
gcggcgtggacctgaagggc |
1373094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 1385118 - 1384903
Alignment:
| Q |
26 |
agggaagaataactgaatgagtattctaatctatatattatagttgacttgatagcttgaaaataaagtcttatttggaaagatttcaacctatactgaa |
125 |
Q |
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| T |
1385118 |
agggtagaaaaactgaattagtactctaatctgtatattatggttgacttgatggcttgaagataaagccttatttggaaagatttcaacctatactgaa |
1385019 |
T |
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| Q |
126 |
attgctctttatattatttgataaatggtatttctttcaactcatatcagttgtaggcat----tgtaacatcagtgagaagtgcacgccaaagatgcgg |
221 |
Q |
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| T |
1385018 |
actgtcttttatgtaatttgataaatggtcttcctttcaacttatgttagttgtaggcatgcattgtggcatcagtgagaagtgcacgccaatgatgcgg |
1384919 |
T |
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| Q |
222 |
cgtggacctgaagggc |
237 |
Q |
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| T |
1384918 |
cgtggacctgaagggc |
1384903 |
T |
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